Chlorine in PDB 6u1t: Crystal Structure of Anti-Nipah Virus (Niv) F 5B3 Antibody Fab Fragment

The structure of Crystal Structure of Anti-Nipah Virus (Niv) F 5B3 Antibody Fab Fragment, PDB code: 6u1t was solved by H.V.Dang, Y.P.Chan, Y.J.Park, J.Snijder, S.C.Da Silva, B.Vu, L.Yan, Y.R.Feng, B.Rockx, T.Geisbert, C.Mire, C.E.Mire, C.C.Bbroder, D.Veesler, Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	68.60 / 1.48
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	78.120, 95.010, 137.200, 90.00, 90.00, 90.00
R / Rfree (%)	13.7 / 17.3

The binding sites of Chlorine atom in the Crystal Structure of Anti-Nipah Virus (Niv) F 5B3 Antibody Fab Fragment (pdb code 6u1t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Anti-Nipah Virus (Niv) F 5B3 Antibody Fab Fragment, PDB code: 6u1t:

Chlorine binding site 1 out of 1 in the Crystal Structure of Anti-Nipah Virus (Niv) F 5B3 Antibody Fab Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Anti-Nipah Virus (Niv) F 5B3 Antibody Fab Fragment within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl301 b:37.9 occ:1.00 OG H:SER52 3.0 21.6 1.0 N H:GLY54 3.2 22.9 1.0 CA H:GLY54 3.3 25.0 1.0 C H:GLY54 3.6 24.3 1.0 CB H:SER52 3.6 19.5 1.0 N H:GLY55 3.7 22.6 1.0 N H:SER56 3.7 27.4 1.0 CB H:SER56 3.9 34.5 1.0 CD1 H:TYR57 4.0 38.6 1.0 OG H:SER56 4.0 40.0 1.0 CE1 H:TYR57 4.2 43.9 1.0 O H:HOH507 4.3 47.2 1.0 O H:GLY54 4.3 27.9 1.0 CA H:SER56 4.4 30.0 1.0 OG H:SER53 4.4 23.0 1.0 C H:SER53 4.4 21.1 1.0 C H:SER52 4.5 19.2 1.0 N H:SER53 4.5 19.9 1.0 CA H:SER52 4.7 18.5 1.0 C H:GLY55 4.7 25.3 1.0 N H:TYR57 4.8 25.2 1.0 CA H:GLY55 4.8 24.7 1.0 O H:SER52 4.8 18.6 1.0 CA H:SER53 5.0 20.2 1.0

H.V.Dang, Y.P.Chan, Y.J.Park, J.Snijder, S.C.Da Silva, B.Vu, L.Yan, Y.R.Feng, B.Rockx, T.W.Geisbert, C.E.Mire, C.C.Broder, D.Veesler. An Antibody Against the F Glycoprotein Inhibits Nipah and Hendra Virus Infections. Nat.Struct.Mol.Biol. V. 26 980 2019.
ISSN: ESSN 1545-9985
PubMed: 31570878
DOI: 10.1038/S41594-019-0308-9