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Chlorine in PDB 6u2m: Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635

Protein crystallography data

The structure of Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635, PDB code: 6u2m was solved by C.Deo, E.R.Schreiter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 122.58 / 2.00
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.560, 60.662, 122.600, 90.00, 91.02, 90.00
R / Rfree (%) 18.6 / 22.6

Other elements in 6u2m:

The structure of Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635 also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Silicon (Si) 2 atoms
Calcium (Ca) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635 (pdb code 6u2m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635, PDB code: 6u2m:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6u2m

Go back to Chlorine Binding Sites List in 6u2m
Chlorine binding site 1 out of 2 in the Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:38.8
occ:1.00
NE1 A:TRP305 3.2 34.0 1.0
ND2 A:ASN239 3.2 39.1 1.0
C27 A:PUJ600 3.4 57.6 1.0
N A:PRO89 3.6 39.2 1.0
CA A:PRO89 3.7 36.0 1.0
CD1 A:TRP305 3.7 34.0 1.0
CD A:PRO89 3.7 41.3 1.0
C A:PHE88 3.7 38.4 1.0
CB A:PHE88 3.8 37.8 1.0
CB A:ASN239 3.8 36.1 1.0
CB A:PRO89 3.9 39.4 1.0
CD1 A:LEU92 3.9 47.8 1.0
CZ A:PHE51 3.9 48.5 1.0
C26 A:PUJ600 4.0 61.1 1.0
O A:PHE88 4.0 38.0 1.0
CG A:ASN239 4.0 37.0 1.0
CG A:LEU92 4.3 44.3 1.0
CG A:PRO89 4.4 42.1 1.0
CD2 A:LEU92 4.4 44.0 1.0
CA A:PHE88 4.4 36.3 1.0
CE2 A:TRP305 4.5 35.2 1.0
CE2 A:PHE51 4.5 49.7 1.0
CE2 A:PHE32 4.6 58.6 1.0
CE1 A:PHE51 4.7 49.0 1.0
OD2 A:ASP304 4.8 40.8 1.0
CG A:PHE88 4.8 36.0 1.0
OD1 A:ASP304 4.9 43.0 1.0
C25 A:PUJ600 5.0 62.6 1.0

Chlorine binding site 2 out of 2 in 6u2m

Go back to Chlorine Binding Sites List in 6u2m
Chlorine binding site 2 out of 2 in the Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl601

b:39.0
occ:1.00
NE1 C:TRP305 3.2 36.7 1.0
ND2 C:ASN239 3.2 36.7 1.0
C27 C:PUJ600 3.4 68.3 1.0
N C:PRO89 3.6 36.1 1.0
CD C:PRO89 3.6 38.6 1.0
CD1 C:TRP305 3.7 35.0 1.0
CA C:PRO89 3.7 37.9 1.0
C C:PHE88 3.8 36.9 1.0
CB C:PHE88 3.8 35.5 1.0
CB C:ASN239 3.9 36.2 1.0
O C:PHE88 4.0 36.7 1.0
CB C:PRO89 4.0 41.1 1.0
CD1 C:LEU92 4.0 44.3 1.0
CZ C:PHE51 4.0 47.0 1.0
CG C:ASN239 4.1 37.0 1.0
CG C:LEU92 4.1 42.4 1.0
C26 C:PUJ600 4.2 72.3 1.0
CD2 C:LEU92 4.2 43.4 1.0
CG C:PRO89 4.3 38.7 1.0
CA C:PHE88 4.4 34.7 1.0
C25 C:PUJ600 4.4 71.5 1.0
CE2 C:TRP305 4.5 35.9 1.0
CE2 C:PHE32 4.5 53.4 1.0
CE2 C:PHE51 4.5 51.8 1.0
OD2 C:ASP304 4.7 43.5 1.0
CG C:PHE88 4.8 36.2 1.0
OD1 C:ASP304 4.9 47.7 1.0
CZ C:PHE32 4.9 54.9 1.0
CE1 C:PHE51 4.9 47.4 1.0

Reference:

C.Deo, L.D.Lavis, E.R.Schreiter. Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2 To Be Published.
Page generated: Sat Jul 12 20:22:42 2025

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