Chlorine in PDB 6u7b: Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex

Protein crystallography data

The structure of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex, PDB code: 6u7b was solved by Q.Ye, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 103.84 / 2.09
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.286, 142.897, 151.157, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 23.3

Other elements in 6u7b:

The structure of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex (pdb code 6u7b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex, PDB code: 6u7b:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6u7b

Go back to Chlorine Binding Sites List in 6u7b
Chlorine binding site 1 out of 2 in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:58.6
occ:1.00
H A:LEU61 2.2 62.7 1.0
H A:ASP74 2.8 70.9 1.0
HB2 A:ASP74 3.0 66.2 1.0
HD11 A:LEU70 3.0 74.8 1.0
HA3 A:GLY59 3.1 64.1 1.0
HB3 A:LEU61 3.1 67.6 1.0
O A:HOH532 3.1 49.3 1.0
HB2 A:LEU61 3.1 67.6 1.0
N A:LEU61 3.1 52.2 1.0
H A:SER60 3.2 59.8 1.0
N A:SER60 3.4 49.8 1.0
CB A:LEU61 3.5 56.3 1.0
HD21 A:LEU70 3.5 74.8 1.0
OG A:SER60 3.5 56.3 1.0
N A:ASP74 3.6 59.1 1.0
C A:GLY59 3.7 52.0 1.0
CB A:ASP74 3.7 55.2 1.0
HA A:ILE73 3.7 86.9 1.0
CA A:GLY59 3.8 53.4 1.0
O A:HOH503 3.8 47.9 1.0
CG A:ASP74 3.8 57.7 1.0
CA A:LEU61 3.9 52.5 1.0
H A:GLY59 3.9 66.3 1.0
CD1 A:LEU70 3.9 62.4 1.0
OD2 A:ASP74 4.0 57.9 1.0
HD13 A:LEU70 4.1 74.8 1.0
C A:SER60 4.1 49.8 1.0
HG A:SER60 4.1 67.5 1.0
CA A:SER60 4.1 48.8 1.0
O A:ASP72 4.2 82.1 1.0
H A:ALA62 4.2 57.9 1.0
CD2 A:LEU70 4.2 62.3 1.0
OD1 A:ASP74 4.3 60.1 1.0
HD22 A:LEU70 4.3 74.8 1.0
CA A:ASP74 4.3 56.0 1.0
N A:GLY59 4.3 55.2 1.0
CB A:SER60 4.4 52.2 1.0
O A:GLY59 4.5 50.3 1.0
HA A:LEU61 4.5 63.0 1.0
HB3 A:ASP74 4.5 66.2 1.0
HD12 A:LEU70 4.5 74.8 1.0
HA2 A:GLY59 4.6 64.1 1.0
CA A:ILE73 4.6 72.4 1.0
C A:ILE73 4.6 64.2 1.0
HG23 A:ILE73 4.6 81.7 1.0
CG A:LEU70 4.7 63.5 1.0
HB3 A:SER60 4.7 62.7 1.0
HD22 A:LEU61 4.8 69.5 1.0
N A:ALA62 4.8 48.2 1.0
O A:ASP74 4.8 52.4 1.0
CG A:LEU61 4.9 57.0 1.0
HB2 A:ALA66 4.9 56.4 1.0
C A:LEU61 4.9 49.7 1.0
HG A:LEU70 5.0 76.2 1.0
HD23 A:LEU61 5.0 69.5 1.0

Chlorine binding site 2 out of 2 in 6u7b

Go back to Chlorine Binding Sites List in 6u7b
Chlorine binding site 2 out of 2 in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:63.6
occ:1.00
H C:LEU61 2.5 37.9 1.0
H C:ASP74 2.5 44.3 1.0
HB2 C:ASP74 2.9 60.0 1.0
O C:HOH543 3.0 33.9 1.0
HA3 C:GLY59 3.0 42.2 1.0
H C:SER60 3.0 37.2 1.0
HG C:SER60 3.1 50.6 1.0
HD11 C:LEU70 3.1 41.4 1.0
HB3 C:LEU61 3.3 43.0 1.0
N C:ASP74 3.4 36.9 1.0
N C:LEU61 3.4 31.5 1.0
N C:SER60 3.4 31.0 1.0
HB2 C:LEU61 3.4 43.0 1.0
HA C:ILE73 3.5 52.0 1.0
CB C:ASP74 3.6 50.0 1.0
CB C:LEU61 3.7 35.9 1.0
CA C:GLY59 3.7 35.2 1.0
C C:GLY59 3.7 32.0 1.0
CG C:ASP74 3.7 58.9 1.0
OG C:SER60 3.8 42.2 1.0
O C:HOH538 3.8 47.8 1.0
HD21 C:LEU70 3.8 46.0 1.0
H C:GLY59 3.8 43.7 1.0
O C:HOH518 3.9 34.5 1.0
CD1 C:LEU70 3.9 34.5 1.0
O C:ASP72 4.0 42.0 1.0
HD13 C:LEU70 4.0 41.4 1.0
CA C:ASP74 4.1 40.6 1.0
OD2 C:ASP74 4.1 62.7 1.0
OD1 C:ASP74 4.1 57.7 1.0
CA C:LEU61 4.2 32.4 1.0
H C:ALA62 4.2 40.0 1.0
N C:GLY59 4.2 36.4 1.0
CA C:SER60 4.3 35.5 1.0
CA C:ILE73 4.3 43.3 1.0
C C:SER60 4.3 32.4 1.0
C C:ILE73 4.3 41.3 1.0
HG23 C:ILE73 4.4 55.5 1.0
HB3 C:ASP74 4.4 60.0 1.0
CD2 C:LEU70 4.5 38.4 1.0
HD12 C:LEU70 4.5 41.4 1.0
HA2 C:GLY59 4.6 42.2 1.0
O C:GLY59 4.6 30.0 1.0
CB C:SER60 4.6 36.0 1.0
HD22 C:LEU70 4.6 46.0 1.0
O C:ASP74 4.7 32.1 1.0
CG C:LEU70 4.8 35.5 1.0
HA C:ASP74 4.8 48.7 1.0
HA C:LEU61 4.9 38.9 1.0
HD22 C:LEU61 4.9 50.1 1.0
C C:ASP74 4.9 36.0 1.0
N C:ALA62 4.9 33.4 1.0
HB3 C:SER60 4.9 43.2 1.0
C C:ASP72 5.0 45.0 1.0

Reference:

Q.Ye, R.K.Lau, I.T.Mathews, E.A.Birkholz, J.D.Watrous, C.S.Azimi, J.Pogliano, M.Jain, K.D.Corbett. Horma Domain Proteins and A TRIP13-Like Atpase Regulate Bacterial Cgas-Like Enzymes to Mediate Bacteriophage Immunity To Be Published.
Page generated: Sat Dec 12 13:47:48 2020

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