Chlorine in PDB 6u7b: Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex
Protein crystallography data
The structure of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex, PDB code: 6u7b
was solved by
Q.Ye,
K.D.Corbett,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
103.84 /
2.09
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.286,
142.897,
151.157,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.5 /
23.3
|
Other elements in 6u7b:
The structure of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex
(pdb code 6u7b). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex, PDB code: 6u7b:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 6u7b
Go back to
Chlorine Binding Sites List in 6u7b
Chlorine binding site 1 out
of 2 in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:58.6
occ:1.00
|
H
|
A:LEU61
|
2.2
|
62.7
|
1.0
|
H
|
A:ASP74
|
2.8
|
70.9
|
1.0
|
HB2
|
A:ASP74
|
3.0
|
66.2
|
1.0
|
HD11
|
A:LEU70
|
3.0
|
74.8
|
1.0
|
HA3
|
A:GLY59
|
3.1
|
64.1
|
1.0
|
HB3
|
A:LEU61
|
3.1
|
67.6
|
1.0
|
O
|
A:HOH532
|
3.1
|
49.3
|
1.0
|
HB2
|
A:LEU61
|
3.1
|
67.6
|
1.0
|
N
|
A:LEU61
|
3.1
|
52.2
|
1.0
|
H
|
A:SER60
|
3.2
|
59.8
|
1.0
|
N
|
A:SER60
|
3.4
|
49.8
|
1.0
|
CB
|
A:LEU61
|
3.5
|
56.3
|
1.0
|
HD21
|
A:LEU70
|
3.5
|
74.8
|
1.0
|
OG
|
A:SER60
|
3.5
|
56.3
|
1.0
|
N
|
A:ASP74
|
3.6
|
59.1
|
1.0
|
C
|
A:GLY59
|
3.7
|
52.0
|
1.0
|
CB
|
A:ASP74
|
3.7
|
55.2
|
1.0
|
HA
|
A:ILE73
|
3.7
|
86.9
|
1.0
|
CA
|
A:GLY59
|
3.8
|
53.4
|
1.0
|
O
|
A:HOH503
|
3.8
|
47.9
|
1.0
|
CG
|
A:ASP74
|
3.8
|
57.7
|
1.0
|
CA
|
A:LEU61
|
3.9
|
52.5
|
1.0
|
H
|
A:GLY59
|
3.9
|
66.3
|
1.0
|
CD1
|
A:LEU70
|
3.9
|
62.4
|
1.0
|
OD2
|
A:ASP74
|
4.0
|
57.9
|
1.0
|
HD13
|
A:LEU70
|
4.1
|
74.8
|
1.0
|
C
|
A:SER60
|
4.1
|
49.8
|
1.0
|
HG
|
A:SER60
|
4.1
|
67.5
|
1.0
|
CA
|
A:SER60
|
4.1
|
48.8
|
1.0
|
O
|
A:ASP72
|
4.2
|
82.1
|
1.0
|
H
|
A:ALA62
|
4.2
|
57.9
|
1.0
|
CD2
|
A:LEU70
|
4.2
|
62.3
|
1.0
|
OD1
|
A:ASP74
|
4.3
|
60.1
|
1.0
|
HD22
|
A:LEU70
|
4.3
|
74.8
|
1.0
|
CA
|
A:ASP74
|
4.3
|
56.0
|
1.0
|
N
|
A:GLY59
|
4.3
|
55.2
|
1.0
|
CB
|
A:SER60
|
4.4
|
52.2
|
1.0
|
O
|
A:GLY59
|
4.5
|
50.3
|
1.0
|
HA
|
A:LEU61
|
4.5
|
63.0
|
1.0
|
HB3
|
A:ASP74
|
4.5
|
66.2
|
1.0
|
HD12
|
A:LEU70
|
4.5
|
74.8
|
1.0
|
HA2
|
A:GLY59
|
4.6
|
64.1
|
1.0
|
CA
|
A:ILE73
|
4.6
|
72.4
|
1.0
|
C
|
A:ILE73
|
4.6
|
64.2
|
1.0
|
HG23
|
A:ILE73
|
4.6
|
81.7
|
1.0
|
CG
|
A:LEU70
|
4.7
|
63.5
|
1.0
|
HB3
|
A:SER60
|
4.7
|
62.7
|
1.0
|
HD22
|
A:LEU61
|
4.8
|
69.5
|
1.0
|
N
|
A:ALA62
|
4.8
|
48.2
|
1.0
|
O
|
A:ASP74
|
4.8
|
52.4
|
1.0
|
CG
|
A:LEU61
|
4.9
|
57.0
|
1.0
|
HB2
|
A:ALA66
|
4.9
|
56.4
|
1.0
|
C
|
A:LEU61
|
4.9
|
49.7
|
1.0
|
HG
|
A:LEU70
|
5.0
|
76.2
|
1.0
|
HD23
|
A:LEU61
|
5.0
|
69.5
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 6u7b
Go back to
Chlorine Binding Sites List in 6u7b
Chlorine binding site 2 out
of 2 in the Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of E. Coli MS115-1 Cdnc:Horma-Deltan Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl403
b:63.6
occ:1.00
|
H
|
C:LEU61
|
2.5
|
37.9
|
1.0
|
H
|
C:ASP74
|
2.5
|
44.3
|
1.0
|
HB2
|
C:ASP74
|
2.9
|
60.0
|
1.0
|
O
|
C:HOH543
|
3.0
|
33.9
|
1.0
|
HA3
|
C:GLY59
|
3.0
|
42.2
|
1.0
|
H
|
C:SER60
|
3.0
|
37.2
|
1.0
|
HG
|
C:SER60
|
3.1
|
50.6
|
1.0
|
HD11
|
C:LEU70
|
3.1
|
41.4
|
1.0
|
HB3
|
C:LEU61
|
3.3
|
43.0
|
1.0
|
N
|
C:ASP74
|
3.4
|
36.9
|
1.0
|
N
|
C:LEU61
|
3.4
|
31.5
|
1.0
|
N
|
C:SER60
|
3.4
|
31.0
|
1.0
|
HB2
|
C:LEU61
|
3.4
|
43.0
|
1.0
|
HA
|
C:ILE73
|
3.5
|
52.0
|
1.0
|
CB
|
C:ASP74
|
3.6
|
50.0
|
1.0
|
CB
|
C:LEU61
|
3.7
|
35.9
|
1.0
|
CA
|
C:GLY59
|
3.7
|
35.2
|
1.0
|
C
|
C:GLY59
|
3.7
|
32.0
|
1.0
|
CG
|
C:ASP74
|
3.7
|
58.9
|
1.0
|
OG
|
C:SER60
|
3.8
|
42.2
|
1.0
|
O
|
C:HOH538
|
3.8
|
47.8
|
1.0
|
HD21
|
C:LEU70
|
3.8
|
46.0
|
1.0
|
H
|
C:GLY59
|
3.8
|
43.7
|
1.0
|
O
|
C:HOH518
|
3.9
|
34.5
|
1.0
|
CD1
|
C:LEU70
|
3.9
|
34.5
|
1.0
|
O
|
C:ASP72
|
4.0
|
42.0
|
1.0
|
HD13
|
C:LEU70
|
4.0
|
41.4
|
1.0
|
CA
|
C:ASP74
|
4.1
|
40.6
|
1.0
|
OD2
|
C:ASP74
|
4.1
|
62.7
|
1.0
|
OD1
|
C:ASP74
|
4.1
|
57.7
|
1.0
|
CA
|
C:LEU61
|
4.2
|
32.4
|
1.0
|
H
|
C:ALA62
|
4.2
|
40.0
|
1.0
|
N
|
C:GLY59
|
4.2
|
36.4
|
1.0
|
CA
|
C:SER60
|
4.3
|
35.5
|
1.0
|
CA
|
C:ILE73
|
4.3
|
43.3
|
1.0
|
C
|
C:SER60
|
4.3
|
32.4
|
1.0
|
C
|
C:ILE73
|
4.3
|
41.3
|
1.0
|
HG23
|
C:ILE73
|
4.4
|
55.5
|
1.0
|
HB3
|
C:ASP74
|
4.4
|
60.0
|
1.0
|
CD2
|
C:LEU70
|
4.5
|
38.4
|
1.0
|
HD12
|
C:LEU70
|
4.5
|
41.4
|
1.0
|
HA2
|
C:GLY59
|
4.6
|
42.2
|
1.0
|
O
|
C:GLY59
|
4.6
|
30.0
|
1.0
|
CB
|
C:SER60
|
4.6
|
36.0
|
1.0
|
HD22
|
C:LEU70
|
4.6
|
46.0
|
1.0
|
O
|
C:ASP74
|
4.7
|
32.1
|
1.0
|
CG
|
C:LEU70
|
4.8
|
35.5
|
1.0
|
HA
|
C:ASP74
|
4.8
|
48.7
|
1.0
|
HA
|
C:LEU61
|
4.9
|
38.9
|
1.0
|
HD22
|
C:LEU61
|
4.9
|
50.1
|
1.0
|
C
|
C:ASP74
|
4.9
|
36.0
|
1.0
|
N
|
C:ALA62
|
4.9
|
33.4
|
1.0
|
HB3
|
C:SER60
|
4.9
|
43.2
|
1.0
|
C
|
C:ASP72
|
5.0
|
45.0
|
1.0
|
|
Reference:
Q.Ye,
R.K.Lau,
I.T.Mathews,
E.A.Birkholz,
J.D.Watrous,
C.S.Azimi,
J.Pogliano,
M.Jain,
K.D.Corbett.
Horma Domain Proteins and A TRIP13-Like Atpase Regulate Bacterial Cgas-Like Enzymes to Mediate Bacteriophage Immunity To Be Published.
Page generated: Mon Jul 29 15:44:52 2024
|