Chlorine in PDB 6uci: Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form

The structure of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form, PDB code: 6uci was solved by Z.Yin, M.Machius, G.Rudenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.67 / 2.09
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	72.278, 97.497, 45.197, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 24.1

The binding sites of Chlorine atom in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form (pdb code 6uci). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form, PDB code: 6uci:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:40.0 occ:1.00 HH11 A:ARG175 2.5 29.8 1.0 HD2 A:ARG175 3.0 34.3 1.0 HB3 A:LYS171 3.0 26.2 1.0 O B:HOH418 3.1 33.4 1.0 HG3 A:ARG175 3.2 32.3 1.0 NH1 A:ARG175 3.3 24.8 1.0 HD3 A:LYS171 3.3 64.4 1.0 HH12 A:ARG175 3.6 29.8 1.0 HD2 A:LYS171 3.6 64.4 1.0 HG2 A:ARG175 3.6 32.3 1.0 CG A:ARG175 3.7 26.9 1.0 CD A:ARG175 3.7 28.6 1.0 CD A:LYS171 3.8 53.7 1.0 CB A:LYS171 4.0 21.8 1.0 HB2 A:LYS171 4.3 26.2 1.0 CZ A:ARG175 4.3 29.5 1.0 HH22 B:ARG176 4.4 43.9 1.0 CG A:LYS171 4.5 32.4 1.0 HD3 A:ARG175 4.5 34.3 1.0 NE A:ARG175 4.5 31.2 1.0 HG2 A:LYS171 4.7 38.9 1.0 O A:LYS171 4.7 19.4 1.0 HZ3 A:LYS171 4.8 79.2 1.0 C A:LYS171 4.9 17.3 1.0 CA A:LYS171 4.9 16.0 1.0 HZ2 A:LYS171 4.9 79.2 1.0 O A:HOH403 5.0 35.1 1.0 NH2 B:ARG176 5.0 36.5 1.0

Chlorine binding site 2 out of 3 in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:72.0 occ:1.00 HZ1 B:LYS171 3.0 0.7 1.0 HE2 B:LYS171 3.3 77.2 1.0 HE3 B:LYS171 3.3 77.2 1.0 CE B:LYS171 3.6 64.3 1.0 NZ B:LYS171 3.7 92.3 1.0 HZ3 B:LYS171 4.2 0.7 1.0 HZ2 B:LYS171 4.3 0.7 1.0 HD11 B:LEU167 4.5 69.9 1.0

Chlorine binding site 3 out of 3 in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl301 b:55.9 occ:1.00 H D:LYS219 2.3 96.2 0.5 H D:LYS219 2.3 96.2 0.5 HH11 B:ARG182 2.7 49.2 1.0 HD3 B:ARG182 2.7 83.2 1.0 HG3 D:LYS219 2.8 68.6 1.0 HA D:HIS218 3.1 90.0 1.0 N D:LYS219 3.1 80.2 1.0 HB2 D:LYS219 3.2 60.3 1.0 NH1 B:ARG182 3.4 41.0 1.0 ND1 D:HIS218 3.4 1.0 1.0 CE1 D:HIS218 3.5 0.4 1.0 CG D:LYS219 3.6 57.1 1.0 CD B:ARG182 3.6 69.3 1.0 CG D:HIS218 3.7 0.1 1.0 CB D:LYS219 3.7 50.2 1.0 HH12 B:ARG182 3.7 49.2 1.0 NE2 D:HIS218 3.8 0.6 1.0 CA D:HIS218 3.8 75.0 1.0 HB2 B:ARG182 3.8 29.0 1.0 HE1 D:HIS218 3.8 0.3 1.0 HD2 B:ARG182 3.8 83.2 1.0 CD2 D:HIS218 3.9 0.6 1.0 C D:HIS218 4.0 70.9 1.0 CA D:LYS219 4.0 78.2 1.0 HD2 D:LYS219 4.0 71.7 1.0 HE2 D:HIS218 4.2 0.1 1.0 CZ B:ARG182 4.2 66.3 1.0 HG2 D:LYS219 4.3 68.6 1.0 NE B:ARG182 4.3 70.9 1.0 CB D:HIS218 4.3 83.7 1.0 CD D:LYS219 4.4 59.8 1.0 HA B:ARG182 4.4 28.9 1.0 HD2 D:HIS218 4.4 0.5 1.0 CB B:ARG182 4.6 24.2 1.0 HB3 D:LYS219 4.6 60.3 1.0 CG B:ARG182 4.6 45.0 1.0 HA D:LYS219 4.7 93.9 1.0 HE3 D:LYS219 4.7 72.7 1.0 O D:ALA217 4.8 34.8 1.0 HG2 B:ARG182 4.9 54.1 1.0 HB2 D:HIS218 4.9 0.4 1.0

Y.Zhou, H.Venkannagari, H.Lynch, G.Aglyamova, M.Bhandari, M.Machius, E.J.Nestler, A.J.Robison, G.Rudenko. Self-Assembly of the Bzip Transcription Factor Delta-Fosb Curr Res Struct Biol 2019.
DOI: 10.1016/J.CRSTBI.2019.12.001