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Chlorine in PDB 6ud1: Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions

Protein crystallography data

The structure of Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions, PDB code: 6ud1 was solved by J.H.Mills, P.R.Gleason, C.R.Simmons, J.N.Henderson, B.K.Kartchner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 86.16 / 1.55
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 57.351, 57.351, 172.32, 90, 90, 90
R / Rfree (%) 16.6 / 19.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions (pdb code 6ud1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions, PDB code: 6ud1:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6ud1

Go back to Chlorine Binding Sites List in 6ud1
Chlorine binding site 1 out of 2 in the Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:29.0
occ:1.00
N A:ASP36 3.1 26.3 1.0
O A:HOH345 3.2 31.4 1.0
N A:ALA38 3.4 15.9 1.0
C A:ASP36 3.5 24.5 1.0
C A:GLY34 3.5 25.2 1.0
N A:GLY37 3.6 19.1 1.0
CB A:ALA38 3.6 18.3 1.0
CA A:ASP36 3.6 29.0 1.0
CA A:GLY34 3.6 22.0 1.0
N A:ALA35 3.7 27.0 1.0
CB A:ASP36 3.7 32.4 1.0
O A:GLY34 3.9 25.9 1.0
CA A:ALA38 4.1 15.8 1.0
O A:ASP36 4.1 28.7 1.0
C A:ALA35 4.2 29.9 1.0
C A:GLY37 4.4 16.6 1.0
CA A:ALA35 4.4 29.8 1.0
CA A:GLY37 4.5 16.2 1.0
N A:GLY34 4.6 20.2 1.0
CG A:ASP36 4.8 43.0 1.0
OD2 A:ASP36 4.8 48.3 1.0
O A:HOH351 4.9 34.7 1.0
O A:ALA38 4.9 20.1 1.0

Chlorine binding site 2 out of 2 in 6ud1

Go back to Chlorine Binding Sites List in 6ud1
Chlorine binding site 2 out of 2 in the Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:28.3
occ:1.00
N B:ASP36 3.1 26.7 1.0
O B:HOH342 3.2 31.6 1.0
N B:ALA38 3.5 16.3 1.0
C B:GLY34 3.5 25.1 1.0
C B:ASP36 3.5 26.1 1.0
CA B:GLY34 3.5 21.2 1.0
CA B:ASP36 3.6 29.6 1.0
CB B:ALA38 3.6 18.0 1.0
N B:GLY37 3.6 19.3 1.0
CB B:ASP36 3.6 33.5 1.0
N B:ALA35 3.7 27.1 1.0
O B:GLY34 4.0 25.6 1.0
O B:ASP36 4.1 29.6 1.0
CA B:ALA38 4.1 15.9 1.0
C B:ALA35 4.2 30.1 1.0
C B:GLY37 4.4 16.5 1.0
CA B:ALA35 4.5 31.1 1.0
CA B:GLY37 4.6 16.6 1.0
CG B:ASP36 4.6 45.4 1.0
N B:GLY34 4.6 20.4 1.0
OD2 B:ASP36 4.7 54.3 1.0
O B:HOH346 4.8 36.7 1.0
O B:HOH382 4.8 42.9 1.0
O B:ALA38 4.9 20.4 1.0

Reference:

J.H.Mills, P.R.Gleason, C.R.Simmons, J.N.Henderson, B.K.Kartchner. Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions. To Be Published.
Page generated: Mon Jul 29 15:50:08 2024

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