Chlorine in PDB 6udl: Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700
Enzymatic activity of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700
All present enzymatic activity of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700:
1.14.14.1;
4.2.1.152;
Protein crystallography data
The structure of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700, PDB code: 6udl
was solved by
A.G.Bart,
E.E.Scott,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.80 /
2.85
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
65.371,
196.147,
237.222,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23.8 /
28.7
|
Other elements in 6udl:
The structure of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700 also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700
(pdb code 6udl). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700, PDB code: 6udl:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 6udl
Go back to
Chlorine Binding Sites List in 6udl
Chlorine binding site 1 out
of 2 in the Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl602
b:86.1
occ:1.00
|
CL1
|
A:Q4M602
|
0.0
|
86.1
|
1.0
|
C02
|
A:Q4M602
|
1.7
|
68.5
|
1.0
|
H021
|
A:Q4M602
|
2.1
|
68.5
|
1.0
|
H022
|
A:Q4M602
|
2.2
|
68.5
|
1.0
|
H041
|
A:Q4M602
|
2.4
|
61.7
|
1.0
|
C03
|
A:Q4M602
|
2.4
|
64.7
|
1.0
|
H031
|
A:Q4M602
|
2.5
|
64.7
|
1.0
|
H042
|
A:Q4M602
|
2.5
|
61.7
|
1.0
|
HG
|
A:LEU312
|
2.6
|
78.2
|
1.0
|
C04
|
A:Q4M602
|
2.6
|
61.7
|
1.0
|
HD23
|
A:LEU312
|
2.9
|
82.5
|
1.0
|
HG
|
A:SER116
|
3.0
|
76.0
|
1.0
|
HD21
|
A:LEU312
|
3.1
|
82.5
|
1.0
|
CD2
|
A:LEU312
|
3.2
|
68.5
|
1.0
|
CG
|
A:LEU312
|
3.3
|
65.0
|
1.0
|
HG23
|
A:ILE115
|
3.4
|
71.2
|
1.0
|
OG
|
A:SER116
|
3.5
|
63.1
|
1.0
|
C20
|
A:Q4M602
|
3.8
|
65.6
|
1.0
|
HB3
|
A:LEU312
|
3.8
|
77.2
|
1.0
|
HG22
|
A:ILE115
|
4.0
|
71.2
|
1.0
|
N05
|
A:Q4M602
|
4.0
|
61.2
|
1.0
|
CG2
|
A:ILE115
|
4.1
|
59.2
|
1.0
|
CB
|
A:LEU312
|
4.2
|
64.1
|
1.0
|
H
|
A:SER116
|
4.2
|
71.7
|
1.0
|
HD22
|
A:LEU312
|
4.2
|
82.5
|
1.0
|
HE2
|
A:PHE224
|
4.3
|
74.6
|
1.0
|
O
|
A:LEU312
|
4.4
|
61.4
|
1.0
|
HA
|
A:ASP313
|
4.4
|
69.6
|
1.0
|
HG21
|
A:ILE115
|
4.4
|
71.2
|
1.0
|
CD1
|
A:LEU312
|
4.5
|
67.7
|
1.0
|
C
|
A:LEU312
|
4.5
|
62.1
|
1.0
|
HD11
|
A:LEU312
|
4.5
|
81.5
|
1.0
|
HB3
|
A:PHE258
|
4.5
|
80.2
|
1.0
|
H271
|
A:Q4M602
|
4.5
|
65.9
|
1.0
|
C19
|
A:Q4M602
|
4.5
|
65.1
|
1.0
|
HD12
|
A:LEU312
|
4.7
|
81.5
|
1.0
|
N
|
A:SER116
|
4.7
|
59.6
|
1.0
|
C21
|
A:Q4M602
|
4.7
|
63.9
|
1.0
|
O18
|
A:Q4M602
|
4.8
|
63.1
|
1.0
|
N
|
A:ASP313
|
4.8
|
59.6
|
1.0
|
CB
|
A:SER116
|
4.8
|
61.1
|
1.0
|
HA3
|
A:GLY316
|
4.9
|
70.3
|
1.0
|
CA
|
A:LEU312
|
4.9
|
62.0
|
1.0
|
HB2
|
A:LEU312
|
4.9
|
77.2
|
1.0
|
C27
|
A:Q4M602
|
5.0
|
65.9
|
1.0
|
OD1
|
A:ASP313
|
5.0
|
67.2
|
1.0
|
CE2
|
A:PHE224
|
5.0
|
62.0
|
1.0
|
C06
|
A:Q4M602
|
5.0
|
60.0
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 6udl
Go back to
Chlorine Binding Sites List in 6udl
Chlorine binding site 2 out
of 2 in the Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl602
b:71.7
occ:1.00
|
CL1
|
B:Q4M602
|
0.0
|
71.7
|
1.0
|
C02
|
B:Q4M602
|
2.0
|
57.1
|
1.0
|
H021
|
B:Q4M602
|
2.4
|
57.1
|
1.0
|
H022
|
B:Q4M602
|
2.4
|
57.1
|
1.0
|
H
|
B:SER116
|
2.6
|
57.6
|
1.0
|
H031
|
B:Q4M602
|
2.9
|
55.6
|
1.0
|
C03
|
B:Q4M602
|
3.0
|
55.6
|
1.0
|
OD1
|
B:ASN255
|
3.2
|
51.5
|
1.0
|
HA
|
B:ASN255
|
3.2
|
66.1
|
1.0
|
HG23
|
B:ILE115
|
3.2
|
53.4
|
1.0
|
HB3
|
B:ASN255
|
3.3
|
61.4
|
1.0
|
N
|
B:SER116
|
3.4
|
47.8
|
1.0
|
HD21
|
B:LEU312
|
3.5
|
61.5
|
1.0
|
H042
|
B:Q4M602
|
3.5
|
49.2
|
1.0
|
HA
|
B:ILE115
|
3.6
|
53.3
|
1.0
|
HB3
|
B:PHE258
|
3.7
|
65.8
|
1.0
|
HG
|
B:LEU312
|
3.8
|
56.1
|
1.0
|
HA
|
B:SER116
|
3.8
|
51.8
|
1.0
|
HB2
|
B:PHE258
|
3.8
|
65.8
|
1.0
|
C04
|
B:Q4M602
|
3.8
|
49.2
|
1.0
|
CB
|
B:ASN255
|
3.8
|
51.0
|
1.0
|
CA
|
B:ASN255
|
3.9
|
54.9
|
1.0
|
CG
|
B:ASN255
|
3.9
|
51.8
|
1.0
|
O
|
B:ASN255
|
3.9
|
49.6
|
1.0
|
OG
|
B:SER116
|
3.9
|
49.2
|
1.0
|
HD23
|
B:LEU312
|
4.0
|
61.5
|
1.0
|
CD2
|
B:LEU312
|
4.1
|
51.0
|
1.0
|
H041
|
B:Q4M602
|
4.1
|
49.2
|
1.0
|
CA
|
B:SER116
|
4.1
|
42.9
|
1.0
|
CG2
|
B:ILE115
|
4.2
|
44.3
|
1.0
|
CB
|
B:PHE258
|
4.2
|
54.7
|
1.0
|
HD1
|
B:TYR259
|
4.2
|
55.7
|
1.0
|
C20
|
B:Q4M602
|
4.3
|
54.0
|
1.0
|
H271
|
B:Q4M602
|
4.3
|
59.9
|
1.0
|
CA
|
B:ILE115
|
4.3
|
44.2
|
1.0
|
C
|
B:ASN255
|
4.3
|
52.4
|
1.0
|
C
|
B:ILE115
|
4.3
|
45.7
|
1.0
|
CG
|
B:LEU312
|
4.4
|
46.6
|
1.0
|
HG22
|
B:ILE115
|
4.5
|
53.4
|
1.0
|
HE2
|
B:PHE224
|
4.5
|
58.0
|
1.0
|
HG
|
B:SER116
|
4.6
|
59.2
|
1.0
|
CB
|
B:SER116
|
4.6
|
44.1
|
1.0
|
HD11
|
B:LEU312
|
4.6
|
64.0
|
1.0
|
HG21
|
B:ILE115
|
4.7
|
53.4
|
1.0
|
HB2
|
B:ASN255
|
4.8
|
61.4
|
1.0
|
HG12
|
B:ILE115
|
4.8
|
51.7
|
1.0
|
HD2
|
B:PHE258
|
4.8
|
68.1
|
1.0
|
CB
|
B:ILE115
|
4.8
|
43.6
|
1.0
|
C27
|
B:Q4M602
|
4.9
|
59.9
|
1.0
|
H
|
B:TYR259
|
4.9
|
62.1
|
1.0
|
HD22
|
B:LEU312
|
5.0
|
61.5
|
1.0
|
HB2
|
B:TYR259
|
5.0
|
57.0
|
1.0
|
C21
|
B:Q4M602
|
5.0
|
56.6
|
1.0
|
|
Reference:
A.G.Bart,
E.E.Scott.
Designed Duocarmycin Prodrugs For Human Cytochrome P450 1A1 and 2W1 To Be Published.
Page generated: Mon Jul 29 15:51:52 2024
|