Chlorine in PDB 6ujd: Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp.

All present enzymatic activity of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp.:
6.1.1.16;

The structure of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp., PDB code: 6ujd was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.46 / 2.60
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.260, 78.260, 208.900, 90.00, 90.00, 90.00
R / Rfree (%)	17.6 / 21.7

The structure of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. (pdb code 6ujd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp., PDB code: 6ujd:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl502 b:90.7 occ:1.00 N A:ALA197 3.3 67.2 1.0 CA A:PHE196 3.8 60.5 1.0 CB A:ALA197 3.9 60.7 1.0 NZ A:LYS200 3.9 89.7 1.0 C A:PHE196 4.1 65.8 1.0 CB A:PHE196 4.2 57.5 1.0 CA A:ALA197 4.2 60.1 1.0 O A:ASP195 4.7 77.2 1.0 CE A:LYS200 4.8 85.3 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl503 b:1.0 occ:1.00 O A:PHE317 3.1 63.2 1.0 OG A:SER47 3.2 53.7 1.0 NE A:ARG43 3.5 59.0 1.0 O A:ALA320 3.6 65.6 1.0 C A:PHE317 3.7 57.7 1.0 NH1 A:ARG43 4.0 71.6 1.0 CG A:ARG43 4.1 68.8 1.0 O A:HOH603 4.1 46.8 1.0 CB A:PHE317 4.2 54.1 1.0 CZ A:ARG43 4.2 63.0 1.0 N A:LEU318 4.2 60.7 1.0 CA A:LEU318 4.3 62.1 1.0 CD2 A:LEU318 4.4 45.8 1.0 CA A:PHE317 4.4 59.1 1.0 CD A:ARG43 4.4 63.2 1.0 CB A:SER47 4.5 46.0 1.0 CA A:TYR322 4.5 54.5 1.0 CD2 A:LEU46 4.7 55.3 1.0 C A:ALA320 4.7 56.6 1.0 CA A:SER47 4.8 51.8 1.0 N A:TYR322 4.8 51.9 1.0 CB A:TYR322 4.8 49.1 1.0 O A:ARG43 4.9 61.4 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl504 b:97.5 occ:1.00 ZN A:ZN501 2.6 62.0 0.8 SG A:CYS225 3.4 58.7 1.0 NE1 A:TRP221 3.5 62.3 1.0 ND2 A:ASN67 3.5 54.9 1.0 NE2 A:HIS250 3.6 67.8 1.0 OG1 A:THR69 3.6 58.5 1.0 CB A:CYS29 3.7 47.2 1.0 SG A:CYS29 3.8 57.5 1.0 OD1 A:ASN67 3.8 59.7 1.0 O A:GLY30 3.9 51.7 1.0 N A:GLY30 4.0 54.0 1.0 O A:HOH618 4.0 62.9 1.0 CA A:CYS29 4.1 53.6 1.0 CZ2 A:TRP221 4.1 55.0 1.0 CG A:ASN67 4.1 54.4 1.0 CE2 A:TRP221 4.1 60.2 1.0 C A:CYS29 4.3 57.2 1.0 CD2 A:HIS250 4.4 61.0 1.0 CE1 A:HIS250 4.4 59.9 1.0 CD1 A:TRP221 4.6 57.8 1.0 C A:GLY30 4.8 56.5 1.0 CA A:GLY30 4.9 55.1 1.0 CB A:THR69 5.0 54.9 1.0

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Cysteine-Trna Ligase From Elizabethkingia Sp. To Be Published.