Chlorine in PDB 6v89: Human CTBP1 (28-375) in Complex with Amp

Protein crystallography data

The structure of Human CTBP1 (28-375) in Complex with Amp, PDB code: 6v89 was solved by W.E.Royer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.14 / 2.45
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.944, 88.944, 163.72, 90, 90, 120
R / Rfree (%) 23.1 / 27.4

Other elements in 6v89:

The structure of Human CTBP1 (28-375) in Complex with Amp also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human CTBP1 (28-375) in Complex with Amp (pdb code 6v89). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Human CTBP1 (28-375) in Complex with Amp, PDB code: 6v89:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6v89

Go back to Chlorine Binding Sites List in 6v89
Chlorine binding site 1 out of 2 in the Human CTBP1 (28-375) in Complex with Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human CTBP1 (28-375) in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:50.7
occ:1.00
OG A:SER324 3.1 41.3 1.0
O A:HOH675 3.3 52.4 1.0
NH1 A:ARG328 3.3 40.1 1.0
CB A:SER324 3.5 39.9 1.0
CG1 A:ILE325 4.0 39.4 1.0
CD A:ARG328 4.1 37.3 1.0
N A:ILE325 4.1 40.2 1.0
C A:SER324 4.1 40.8 1.0
CG2 A:VAL40 4.3 39.2 1.0
CZ A:ARG328 4.4 39.3 1.0
O A:SER324 4.5 42.5 1.0
CA A:SER324 4.5 39.7 1.0
CA A:ILE325 4.6 39.8 1.0
NE A:ARG328 4.7 38.0 1.0
CD1 A:ILE325 4.9 38.4 1.0
CB A:ILE325 4.9 39.6 1.0

Chlorine binding site 2 out of 2 in 6v89

Go back to Chlorine Binding Sites List in 6v89
Chlorine binding site 2 out of 2 in the Human CTBP1 (28-375) in Complex with Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human CTBP1 (28-375) in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:44.5
occ:1.00
N A:ARG171 3.2 41.3 1.0
CA A:ALA170 3.4 42.1 1.0
O A:HOH664 3.8 48.4 1.0
C A:ALA170 3.8 41.2 1.0
CB A:ALA170 3.8 41.1 1.0
CB A:ARG171 4.1 40.0 1.0
O A:ALA169 4.2 47.8 1.0
CA A:ARG171 4.3 40.5 1.0
O A:HOH715 4.5 52.4 1.0
N A:ALA170 4.6 43.6 1.0
C A:ALA169 4.8 45.0 1.0

Reference:

J.C.Nichols, C.A.Schiffer, W.E.Royer. Nad(H) Phosphates Mediate Tetramer Assembly of Human C-Terminal Binding Protein (Ctbp) J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X
Page generated: Wed Mar 3 12:52:09 2021

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