Chlorine in PDB 6v8u: Kaiso (ZBTB33) Zinc Finger Dna Binding Domain in Complex with A Modified Kaiso Binding Sequence (Kbs)

Protein crystallography data

The structure of Kaiso (ZBTB33) Zinc Finger Dna Binding Domain in Complex with A Modified Kaiso Binding Sequence (Kbs), PDB code: 6v8u was solved by E.N.Nikolova, R.L.Stanfield, H.J.Dyson, P.E.Wright, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.92 / 2.10
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 44.142, 183.624, 97.755, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 20.4

Other elements in 6v8u:

The structure of Kaiso (ZBTB33) Zinc Finger Dna Binding Domain in Complex with A Modified Kaiso Binding Sequence (Kbs) also contains other interesting chemical elements:

Zinc (Zn) 3 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Kaiso (ZBTB33) Zinc Finger Dna Binding Domain in Complex with A Modified Kaiso Binding Sequence (Kbs) (pdb code 6v8u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Kaiso (ZBTB33) Zinc Finger Dna Binding Domain in Complex with A Modified Kaiso Binding Sequence (Kbs), PDB code: 6v8u:

Chlorine binding site 1 out of 1 in 6v8u

Go back to Chlorine Binding Sites List in 6v8u
Chlorine binding site 1 out of 1 in the Kaiso (ZBTB33) Zinc Finger Dna Binding Domain in Complex with A Modified Kaiso Binding Sequence (Kbs)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Kaiso (ZBTB33) Zinc Finger Dna Binding Domain in Complex with A Modified Kaiso Binding Sequence (Kbs) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl704

b:31.7
occ:0.50
N A:ARG548 3.3 29.9 1.0
O A:HOH828 3.4 32.5 1.0
NH2 A:ARG590 3.7 37.2 1.0
O A:ARG548 3.9 38.3 1.0
CA A:ARG548 4.1 33.3 1.0
CG A:GLU547 4.1 41.1 1.0
CB A:ARG548 4.1 38.3 1.0
C A:ARG548 4.2 33.9 1.0
CA A:GLU547 4.2 42.3 1.0
C A:GLU547 4.2 46.4 1.0
CZ A:ARG590 4.7 48.2 1.0
CB A:GLU547 4.8 39.2 1.0
NE A:ARG590 4.8 38.7 1.0

Reference:

E.N.Nikolova, R.L.Stanfield, H.J.Dyson, P.E.Wright. A Conformational Switch at the Zinc Finger Protein Kaiso Directs Recognitions of Specific and Methylated Dna To Be Published.
Page generated: Sat Dec 12 14:15:59 2020

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