Chlorine in PDB 6vbb: 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii

Protein crystallography data

The structure of 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii, PDB code: 6vbb was solved by G.Minasov, Z.Wawrzak, L.Shuvalova, O.Kiryukhina, I.Dubrovska, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.43 / 2.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 136.311, 102.525, 68.035, 90.00, 116.28, 90.00
R / Rfree (%) 18.3 / 23.7

Other elements in 6vbb:

The structure of 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii (pdb code 6vbb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii, PDB code: 6vbb:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6vbb

Go back to Chlorine Binding Sites List in 6vbb
Chlorine binding site 1 out of 3 in the 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:90.9
occ:1.00
O A:ILE105 3.5 70.3 1.0
O A:GLN106 3.7 75.4 1.0
C A:GLN106 4.3 75.2 1.0
OG1 A:THR108 4.3 69.4 1.0
CA A:GLN106 4.7 75.2 1.0
C A:ILE105 4.7 69.8 1.0
O A:TYR107 4.9 69.3 1.0
C A:TYR107 5.0 70.8 1.0

Chlorine binding site 2 out of 3 in 6vbb

Go back to Chlorine Binding Sites List in 6vbb
Chlorine binding site 2 out of 3 in the 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:93.2
occ:0.50
CD B:PRO50 3.3 78.3 1.0
N B:PRO50 3.9 84.0 1.0
OD2 A:ASP74 4.5 58.8 1.0
CG B:PRO50 4.7 70.0 1.0
NH2 A:ARG65 4.8 93.0 1.0

Chlorine binding site 3 out of 3 in 6vbb

Go back to Chlorine Binding Sites List in 6vbb
Chlorine binding site 3 out of 3 in the 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:87.6
occ:1.00
OD2 B:ASP74 3.3 70.7 1.0
CD A:PRO50 3.7 89.0 1.0
N A:PRO50 3.9 98.0 1.0
CG A:PRO50 4.0 89.3 1.0
CG B:ASP74 4.4 68.2 1.0
CA A:PRO50 4.5 96.8 1.0
CB A:PRO50 4.9 91.0 1.0

Reference:

G.Minasov, Z.Wawrzak, L.Shuvalova, O.Kiryukhina, I.Dubrovska, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 From Acinetobacter Baumannii To Be Published.
Page generated: Sat Dec 12 14:16:30 2020

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