Chlorine in PDB 6vf0: Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min)

Enzymatic activity of Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min)

All present enzymatic activity of Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min), PDB code: 6vf0 was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	34.96 / 1.58
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	59.982, 68.437, 110.615, 90, 90, 90
*R / R_free (%)*	16.4 / 18.7

Other elements in 6vf0:

The structure of Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min) also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Sodium	(Na)	2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min) (pdb code 6vf0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min), PDB code: 6vf0:

Chlorine binding site 1 out of 1 in 6vf0

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Chlorine Binding Sites List in 6vf0

Chlorine binding site 1 out of 1 in the Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min)

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl512 b:38.4 occ:0.79	OG	A:SER172	1.9	39.2	0.2
	O	A:HOH793	2.9	43.7	1.0
	CB	A:SER172	3.1	38.8	0.2
	CB	A:SER172	3.2	40.4	0.8
	N	A:ARG175	3.2	20.9	0.5
	N	A:ARG175	3.2	20.9	0.5
	CA	A:SER172	3.3	30.5	0.2
	CA	A:SER172	3.3	31.1	0.8
	N	A:GLY174	3.4	24.0	1.0
	C	A:SER172	3.4	26.1	0.8
	C	A:SER172	3.4	24.8	0.2
	NH1	A:ARG175	3.4	35.8	0.5
	CG	A:ARG175	3.6	25.0	0.5
	CG	A:ARG175	3.6	23.4	0.5
	O	A:SER172	3.7	25.8	0.8
	CA	A:GLY174	3.7	24.0	1.0
	O	A:SER172	3.8	25.1	0.2
	N	A:GLU173	3.8	25.7	1.0
	CD	A:ARG175	3.9	26.1	0.5
	C	A:GLY174	4.0	20.3	1.0
	CB	A:ARG175	4.0	23.2	0.5
	CB	A:ARG175	4.0	22.8	0.5
	CD	A:ARG175	4.1	26.2	0.5
	OG	A:SER172	4.2	52.6	0.8
	CA	A:ARG175	4.2	21.5	0.5
	CA	A:ARG175	4.2	21.6	0.5
	O6	D:DG1	4.3	25.5	1.0
	C	A:GLU173	4.4	21.8	1.0
	CZ	A:ARG175	4.5	29.6	0.5
	O	A:HOH782	4.5	47.0	1.0
	C6	D:DG1	4.6	22.6	1.0
	NE	A:ARG175	4.7	27.8	0.5
	CA	A:GLU173	4.7	28.4	1.0
	N	A:SER172	4.7	28.1	0.2
	N7	D:DG1	4.8	24.7	1.0
	N	A:SER172	4.8	25.9	0.8
	C5	D:DG1	4.8	22.7	1.0
	O	D:HOH109	5.0	52.3	1.0

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Dna Polymerase Mu, 8-Oxorgtp:at Reaction State Ternary Complex, 50 Mm MG2+ (30 Min) To Be Published.

Page generated: Sat Jul 12 20:52:34 2025

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