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Chlorine in PDB 6vf1: Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min)

Enzymatic activity of Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min)

All present enzymatic activity of Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min), PDB code: 6vf1 was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.02 / 1.68
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.044, 68.415, 111.07, 90, 90, 90
R / Rfree (%) 16.3 / 18.8

Other elements in 6vf1:

The structure of Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min) (pdb code 6vf1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min), PDB code: 6vf1:

Chlorine binding site 1 out of 1 in 6vf1

Go back to Chlorine Binding Sites List in 6vf1
Chlorine binding site 1 out of 1 in the Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:30.8
occ:0.68
 OG A:SER172 2.1 39.6 0.3
O A:HOH782 3.1 45.0 1.0
CB A:SER172 3.2 31.6 0.3
N A:ARG175 3.3 14.0 0.5
CB A:SER172 3.3 31.9 0.7
N A:ARG175 3.3 13.9 0.5
CA A:SER172 3.3 24.3 0.3
CA A:SER172 3.3 24.1 0.7
C A:SER172 3.4 21.4 0.7
N A:GLY174 3.4 19.7 1.0
C A:SER172 3.4 21.4 0.3
NH1 A:ARG175 3.5 30.6 0.5
CG A:ARG175 3.6 20.0 0.5
CG A:ARG175 3.7 20.8 0.5
O A:SER172 3.7 20.2 0.7
N A:GLU173 3.8 21.5 1.0
O A:SER172 3.8 19.9 0.3
CA A:GLY174 3.8 19.4 1.0
CD A:ARG175 3.9 25.7 0.5
CB A:ARG175 4.0 16.5 0.5
C A:GLY174 4.0 16.4 1.0
CB A:ARG175 4.0 16.3 0.5
CD A:ARG175 4.1 25.2 0.5
CA A:ARG175 4.2 14.2 0.5
CA A:ARG175 4.3 13.9 0.5
OG A:SER172 4.3 35.7 0.7
O6 D:DG1 4.3 19.0 1.0
C A:GLU173 4.3 18.7 1.0
O A:HOH739 4.4 42.3 1.0
CZ A:ARG175 4.5 30.9 0.5
C6 D:DG1 4.7 17.3 1.0
CA A:GLU173 4.7 24.6 1.0
NE A:ARG175 4.7 29.7 0.5
N A:SER172 4.8 22.2 0.3
N A:SER172 4.8 22.1 0.7
C5 D:DG1 4.9 16.3 1.0
N7 D:DG1 4.9 18.6 1.0

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Dna Polymerase Mu, 8-Oxorgtp:at Product State Ternary Complex, 50 Mm MG2+ (120 Min) To Be Published.
Page generated: Mon Jul 29 16:16:07 2024

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