Chlorine in PDB 6vhz: Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn

The structure of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn, PDB code: 6vhz was solved by D.F.Kreitler, A.M.Gulick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.37 / 2.12
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	77.013, 61.408, 80.518, 90.00, 100.43, 90.00
R / Rfree (%)	20.3 / 22.7

The structure of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn also contains other interesting chemical elements:

Bromine

(Br)

3 atoms

The binding sites of Chlorine atom in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn (pdb code 6vhz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn, PDB code: 6vhz:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl502 b:54.8 occ:1.00 N A:ARG70 3.1 41.1 1.0 O A:HOH604 3.2 40.9 1.0 CB A:PRO224 3.4 47.7 1.0 CA A:PRO224 3.6 47.1 1.0 CA A:GLU69 3.6 45.4 1.0 CG A:ARG70 3.8 35.6 1.0 NH1 A:ARG70 3.8 44.7 1.0 C A:GLU69 3.9 44.4 1.0 CZ A:ARG70 3.9 46.4 1.0 CB A:ARG70 3.9 36.7 1.0 N A:GLY225 3.9 51.6 1.0 O A:HOH626 3.9 47.6 1.0 CB A:GLU69 4.0 49.4 1.0 CA A:ARG70 4.1 38.5 1.0 NE A:ARG70 4.2 44.8 1.0 NH2 A:ARG70 4.2 45.2 1.0 C A:PRO224 4.3 50.1 1.0 CG A:GLU69 4.4 53.5 1.0 CB A:SER93 4.5 56.1 1.0 OG A:SER93 4.5 57.2 1.0 O A:HOH623 4.6 60.8 1.0 CD A:ARG70 4.6 41.1 1.0 N A:PRO224 4.8 44.0 1.0 O A:ILE68 4.8 39.8 1.0 N A:GLU69 4.8 39.0 1.0 CG A:PRO224 4.9 50.2 1.0

Chlorine binding site 2 out of 5 in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl503 b:69.1 occ:1.00 OG A:SER205 3.8 36.6 1.0 NE1 A:TRP210 3.8 43.5 1.0 CD1 A:LEU155 4.1 57.2 1.0 CE A:MET88 4.2 65.9 1.0 CB A:ALA206 4.2 39.4 1.0 O A:ILE200 4.3 37.2 1.0 CA A:ALA206 4.4 41.7 1.0 N A:ALA206 4.4 38.3 1.0 CD1 A:ILE209 4.6 38.7 1.0 CD1 A:TRP210 4.6 43.6 1.0 CG A:PRO90 4.8 42.6 1.0 CE2 A:TRP210 4.9 47.0 1.0 C A:SER205 4.9 40.5 1.0 O A:PHE202 4.9 38.9 1.0 CB A:SER205 4.9 35.7 1.0

Chlorine binding site 3 out of 5 in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl504 b:98.4 occ:1.00 O A:ASP115 4.1 60.9 1.0 CB A:ASP116 4.2 87.8 1.0 OD2 A:ASP115 4.3 51.6 1.0 CG A:ASP115 4.4 52.4 1.0 OE2 A:GLU69 4.5 62.1 1.0 OE1 A:GLU69 4.6 59.5 1.0 CD A:GLU69 4.6 59.2 1.0 C A:ASP115 4.6 60.1 1.0 OD1 A:ASP115 4.7 52.1 1.0 CB A:ASP115 4.8 52.9 1.0 CG A:ASP116 4.9 92.7 1.0 CA A:ASP116 4.9 81.2 1.0 OD2 A:ASP116 5.0 95.3 1.0 N A:ASP116 5.0 69.7 1.0

Chlorine binding site 4 out of 5 in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl502 b:65.3 occ:1.00 OG B:SER362 2.8 68.6 1.0 N B:SER362 3.4 54.4 1.0 CB B:TYR361 3.5 48.6 1.0 N B:SER168 3.5 53.3 1.0 N B:ASP363 3.6 69.5 1.0 O B:SER168 3.8 47.4 1.0 CB B:LYS167 3.8 76.0 1.0 CB B:SER362 4.0 64.0 1.0 CA B:LYS167 4.0 72.6 1.0 CA B:SER362 4.1 61.3 1.0 CB B:ASP363 4.2 80.6 1.0 CA B:TYR361 4.2 45.3 1.0 C B:TYR361 4.3 51.4 1.0 C B:LYS167 4.3 58.8 1.0 CG B:TYR361 4.3 48.0 1.0 C B:SER362 4.3 67.3 1.0 CA B:SER168 4.4 47.2 1.0 CB B:SER168 4.5 46.9 1.0 CD1 B:TYR361 4.5 46.6 1.0 C B:SER168 4.5 42.4 1.0 CA B:ASP363 4.6 73.1 1.0

Chlorine binding site 5 out of 5 in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with Anthranilyl-Amsn within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl503 b:59.3 occ:1.00 N B:ARG70 3.2 41.5 1.0 NH1 B:ARG70 3.5 37.9 1.0 CZ B:ARG70 3.5 42.4 1.0 CG B:ARG70 3.7 35.1 1.0 CB B:PRO224 3.7 48.0 1.0 CA B:PRO224 3.7 45.2 1.0 O B:HOH642 3.7 45.8 1.0 CB B:ARG70 3.8 36.5 1.0 OG B:SER93 3.8 70.9 1.0 CA B:GLU69 3.9 42.2 1.0 NH2 B:ARG70 3.9 39.2 1.0 NE B:ARG70 3.9 40.9 1.0 C B:GLU69 4.0 43.1 1.0 CA B:ARG70 4.0 39.6 1.0 N B:GLY225 4.1 47.5 1.0 CD B:ARG70 4.4 35.7 1.0 CB B:GLU69 4.4 43.9 1.0 C B:PRO224 4.5 45.9 1.0 N B:PRO224 4.8 42.3 1.0 CG B:GLU69 4.8 51.5 1.0 O B:ILE68 4.9 36.9 1.0 O B:HOH625 4.9 44.9 1.0

E.M.Alexander, D.F.Kreitler, V.Guidolin, A.K.Hurben, E.J.Drake, P.W.Villalta, S.Balbo, A.M.Gulick, C.C.Aldrich. Biosynthesis, Mechanism of Action, and Inhibition of the Enterotoxin Tilimycin Produced By the Opportunistic Pathogen Klebsiella Oxytoca. Acs Infect Dis. 2020.
ISSN: ESSN 2373-8227
PubMed: 32485104
DOI: 10.1021/ACSINFECDIS.0C00326