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Chlorine in PDB 6vj0: Crystal Structure of A Chitin-Binding Protein From Moringa Oleifera Seeds (Mo-CBP4)

Protein crystallography data

The structure of Crystal Structure of A Chitin-Binding Protein From Moringa Oleifera Seeds (Mo-CBP4), PDB code: 6vj0 was solved by E.H.S.Bezerra, T.D.P.Lopes, F.M.S.Da Silva, H.P.S.Costa, V.N.Freire, B.A.M.Rocha, D.O.B.Sousa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.87 / 1.90
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 107.052, 107.052, 42.958, 90, 90, 90
R / Rfree (%) 19.8 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Chitin-Binding Protein From Moringa Oleifera Seeds (Mo-CBP4) (pdb code 6vj0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Chitin-Binding Protein From Moringa Oleifera Seeds (Mo-CBP4), PDB code: 6vj0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6vj0

Go back to Chlorine Binding Sites List in 6vj0
Chlorine binding site 1 out of 2 in the Crystal Structure of A Chitin-Binding Protein From Moringa Oleifera Seeds (Mo-CBP4)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Chitin-Binding Protein From Moringa Oleifera Seeds (Mo-CBP4) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:77.3
occ:1.00
NE2 A:GLN61 2.6 41.7 1.0
CB A:GLN61 3.3 34.4 1.0
CD A:GLN61 3.7 53.5 1.0
CG A:GLN61 4.0 47.5 1.0
CB A:PRO58 4.0 53.0 1.0
CG A:PRO58 4.1 55.8 1.0
CA A:GLN61 4.5 29.5 1.0
N A:GLN61 4.6 26.5 1.0
OE1 A:GLN61 4.8 58.2 1.0

Chlorine binding site 2 out of 2 in 6vj0

Go back to Chlorine Binding Sites List in 6vj0
Chlorine binding site 2 out of 2 in the Crystal Structure of A Chitin-Binding Protein From Moringa Oleifera Seeds (Mo-CBP4)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Chitin-Binding Protein From Moringa Oleifera Seeds (Mo-CBP4) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:67.2
occ:1.00
CB A:GLN27 3.2 64.2 1.0
C A:SER26 3.5 47.2 1.0
O A:SER26 3.6 58.2 1.0
CG A:GLN97 3.7 43.7 1.0
N A:GLN27 3.8 42.3 1.0
CD2 A:HIS100 3.9 39.6 0.4
CA A:SER26 3.9 47.4 1.0
CG A:GLN27 4.0 69.0 1.0
CD2 A:HIS100 4.1 51.9 0.6
CA A:GLN27 4.1 59.7 1.0
CG A:HIS100 4.1 30.6 0.6
CD A:GLN27 4.2 79.1 1.0
CD A:GLN97 4.3 51.2 1.0
NE2 A:GLN27 4.4 83.1 1.0
NE2 A:HIS100 4.4 48.9 0.6
ND1 A:HIS100 4.4 44.9 0.6
OE1 A:GLN97 4.4 56.7 1.0
CB A:HIS100 4.4 35.1 0.6
CB A:GLN97 4.5 37.9 1.0
CB A:HIS100 4.5 35.1 0.4
CG A:HIS100 4.6 36.1 0.4
O A:HOH348 4.6 56.1 1.0
CB A:SER26 4.6 35.5 1.0
CE1 A:HIS100 4.7 30.4 0.6
CA A:GLN97 4.7 31.2 1.0
OE1 A:GLN27 4.7 84.6 1.0

Reference:

T.D.P.Lopes, H.P.S.Costa, M.L.Pereira, J.X.S.Neto, N.M.N.De Alencar, I.M.Vasconcelos, J.T.A.Oliveira, F.M.S.Da Silva, V.N.Freire, E.H.S.Bezerra, B.A.M.Rocha, D.O.B.Sousa. Structural Characterization of A Lectin From Moringa Oleifera Seeds with Imflammatory Activities To Be Published.
Page generated: Mon Jul 29 16:20:56 2024

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