Chlorine in PDB 6vjj: Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf

Enzymatic activity of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf

All present enzymatic activity of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf, PDB code: 6vjj was solved by T.H.Tran, S.Dharmaiah, D.K.Simanshu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	49.03 / 1.40
*Space group*	P 2 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	44.132, 67.572, 71.260, 90.00, 90.00, 90.00
*R / R_free (%)*	16.5 / 19.5

Other elements in 6vjj:

The structure of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf (pdb code 6vjj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf, PDB code: 6vjj:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6vjj

Go back to

Chlorine Binding Sites List in 6vjj

Chlorine binding site 1 out of 3 in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl203 b:35.9 occ:1.00	O	A:HOH331	2.9	24.7	1.0
	NH1	A:ARG135	3.1	20.6	1.0
	CD	A:ARG135	3.7	20.4	1.0
	CA	A:GLY138	3.7	15.6	1.0
	C	A:GLY138	3.9	15.2	1.0
	N	A:ILE139	4.1	14.0	1.0
	CZ	A:ARG135	4.2	20.4	1.0
	O	A:GLY138	4.4	17.3	1.0
	CA	A:ARG135	4.4	14.6	1.0
	NE	A:ARG135	4.4	21.9	1.0
	O	A:ILE139	4.4	15.3	1.0
	O	A:ARG135	4.6	15.5	1.0
	N	A:GLY138	4.6	16.8	1.0
	O	A:ALA134	4.8	14.3	1.0
	C	A:ILE139	4.9	13.7	1.0
	CG	A:ARG135	4.9	19.6	1.0

Chlorine binding site 2 out of 3 in 6vjj

Go back to

Chlorine Binding Sites List in 6vjj

Chlorine binding site 2 out of 3 in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl204 b:59.5 occ:1.00	O	A:HOH307	3.0	43.0	1.0
	NE2	A:GLN43	3.1	27.3	1.0
	CG	A:GLN43	3.8	19.6	1.0
	CD	A:GLN43	3.9	20.7	1.0
	CG2	A:THR50	4.0	30.4	1.0
	CG2	A:VAL45	4.0	25.2	1.0
	CB	A:GLN43	4.7	18.1	1.0
	O	A:GLN43	4.8	21.7	1.0
	C	A:GLN43	4.8	21.2	1.0
	OG1	A:THR50	4.8	31.0	1.0
	N	A:VAL44	4.9	20.6	1.0
	N	A:VAL45	4.9	19.2	1.0
	CA	A:VAL44	5.0	19.5	0.5
	C	A:VAL44	5.0	19.8	1.0

Chlorine binding site 3 out of 3 in 6vjj

Go back to

Chlorine Binding Sites List in 6vjj

Chlorine binding site 3 out of 3 in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl205 b:26.5 occ:1.00	O	B:HOH348	2.6	42.8	1.0
	O	A:HOH388	3.8	35.6	1.0
	N	A:MET67	3.8	18.6	0.9
	CB	A:MET67	3.9	22.9	0.9
	CA	A:TYR64	4.0	15.4	1.0
	CB	A:ALA66	4.2	19.6	1.0
	CD1	A:TYR64	4.2	23.7	1.0
	O	A:HOH335	4.3	21.9	1.0
	O	A:TYR64	4.3	17.9	1.0
	C	A:TYR64	4.3	16.6	1.0
	CB	A:TYR64	4.3	18.6	1.0
	CA	A:MET67	4.4	20.9	0.9
	O	A:GLU63	4.4	17.3	0.8
	C	A:ALA66	4.6	20.1	1.0
	N	A:ALA66	4.6	17.1	1.0
	CA	A:ALA66	4.7	17.4	1.0
	CG	A:TYR64	4.8	19.6	1.0

Reference:

T.H.Tran, D.K.Simanshu. Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf To Be Published.

Page generated: Mon Jul 29 16:21:55 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy