Chlorine in PDB 6vo6: Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp

Enzymatic activity of Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp

All present enzymatic activity of Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp:
5.1.3.2;

Protein crystallography data

The structure of Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp, PDB code: 6vo6 was solved by T.K.Anderson, K.D.Spencer, J.B.Thoden, J.P.Huddleston, F.M.Raushel, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	35.14 / 1.50
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	132.608, 84.343, 135.450, 90.00, 96.97, 90.00
*R / R_free (%)*	16.3 / 18.9

Other elements in 6vo6:

The structure of Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp also contains other interesting chemical elements:

Sodium

(Na)

1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp (pdb code 6vo6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp, PDB code: 6vo6:

Chlorine binding site 1 out of 1 in 6vo6

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Chlorine Binding Sites List in 6vo6

Chlorine binding site 1 out of 1 in the Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of CJ1427, An Essential Nad-Dependent Dehydrogenase From Campylobacter Jejuni, in the Presence of Nadh and Gdp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl407 b:21.9 occ:1.00	OG	A:SER237	3.0	23.6	1.0
	O	A:HOH682	3.2	17.2	1.0
	O	A:HOH762	3.2	42.4	1.0
	N	A:LEU290	3.3	15.3	1.0
	CB	A:THR289	3.7	17.4	1.0
	CB	A:SER237	3.7	23.8	1.0
	CB	A:ALA238	3.8	16.6	1.0
	CA	A:THR289	3.8	16.0	1.0
	O	A:SER237	4.0	20.4	1.0
	CB	A:LEU290	4.1	15.8	1.0
	C	A:THR289	4.1	16.1	1.0
	CD1	A:LEU235	4.1	18.3	1.0
	C	A:SER237	4.1	19.7	1.0
	CG2	A:THR289	4.1	19.3	1.0
	O	A:HOH751	4.3	41.2	1.0
	CA	A:LEU290	4.3	14.9	1.0
	N	A:ALA238	4.4	18.3	1.0
	CA	A:ALA238	4.5	17.3	1.0
	CA	A:SER237	4.6	20.5	1.0
	CD2	A:LEU235	4.8	19.9	1.0
	O	A:HOH669	4.8	29.4	1.0
	CG	A:LEU235	4.9	18.5	1.0
	OG1	A:THR289	4.9	17.3	1.0
	O	A:HOH697	4.9	30.5	1.0
	CB	A:LEU235	4.9	18.8	1.0

Reference:

J.P.Huddleston, T.K.Anderson, K.D.Spencer, J.B.Thoden, F.M.Raushel, H.M.Holden. Structural Analysis of CJ1427, An Essential Nad-Dependent Dehydrogenase For the Biosynthesis of the Heptose Residues in the Capsular Polysaccharides of Campylobacter Jejuni. Biochemistry 2020.
ISSN: ISSN 0006-2960
PubMed: 32168450
DOI: 10.1021/ACS.BIOCHEM.0C00096

Page generated: Mon Jul 29 16:26:35 2024

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