Chlorine in PDB 6vrz: Protein A

Protein crystallography data

The structure of Protein A, PDB code: 6vrz was solved by M.Lu, M.M.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.048, 65.215, 111.462, 90.00, 111.32, 90.00
R / Rfree (%) 22 / 23.3

Other elements in 6vrz:

The structure of Protein A also contains other interesting chemical elements:

Praseodymium (Pr) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Protein A (pdb code 6vrz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Protein A, PDB code: 6vrz:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6vrz

Go back to Chlorine Binding Sites List in 6vrz
Chlorine binding site 1 out of 2 in the Protein A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Protein A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:53.1
occ:1.00
CL1 A:CLM501 0.0 53.1 1.0
C1 A:CLM501 1.8 51.0 1.0
C2 A:CLM501 2.7 50.9 1.0
CL2 A:CLM501 3.0 52.1 1.0
OG A:SER232 3.0 43.0 1.0
N2 A:CLM501 3.4 48.2 1.0
O2 A:CLM501 3.4 52.0 1.0
C3 A:CLM501 3.6 54.2 1.0
CB A:SER232 3.7 36.9 1.0
ND2 A:ASN331 4.0 51.6 1.0
C5 A:CLM501 4.3 50.5 1.0
CD2 A:LEU236 4.6 44.4 1.0
C4 A:CLM501 4.8 45.3 1.0
CA A:SER232 4.8 35.9 1.0
CG2 A:ILE327 4.9 40.1 1.0
CD2 A:LEU235 5.0 43.5 1.0

Chlorine binding site 2 out of 2 in 6vrz

Go back to Chlorine Binding Sites List in 6vrz
Chlorine binding site 2 out of 2 in the Protein A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Protein A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:52.1
occ:1.00
CL2 A:CLM501 0.0 52.1 1.0
C1 A:CLM501 1.8 51.0 1.0
C2 A:CLM501 2.7 50.9 1.0
CL1 A:CLM501 3.0 53.1 1.0
N2 A:CLM501 3.0 48.2 1.0
O A:HOH635 3.3 70.2 1.0
O2 A:CLM501 3.8 52.0 1.0
C3 A:CLM501 3.8 54.2 1.0
C4 A:CLM501 4.4 45.3 1.0
O4 A:CLM501 4.4 45.0 1.0

Reference:

H.H.Wu, J.Symersky, M.Lu. Structure and Mechanism of A Redesigned Multidrug Transporter From the Major Facilitator Superfamily. Sci Rep V. 10 3949 2020.
ISSN: ESSN 2045-2322
PubMed: 32127561
DOI: 10.1038/S41598-020-60332-8
Page generated: Sat Dec 12 14:24:36 2020

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