Chlorine in PDB 6vs0: Protein B

Protein crystallography data

The structure of Protein B, PDB code: 6vs0 was solved by M.Lu, M.M.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.795, 63.433, 109.300, 90.00, 108.85, 90.00
R / Rfree (%) 24 / 26

Other elements in 6vs0:

The structure of Protein B also contains other interesting chemical elements:

Praseodymium (Pr) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Protein B (pdb code 6vs0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Protein B, PDB code: 6vs0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6vs0

Go back to Chlorine Binding Sites List in 6vs0
Chlorine binding site 1 out of 2 in the Protein B


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Protein B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:62.4
occ:1.00
CL1 A:CLM501 0.0 62.4 1.0
C1 A:CLM501 1.8 55.3 1.0
C2 A:CLM501 2.7 55.3 1.0
CL2 A:CLM501 2.9 64.5 1.0
ND2 A:ASN331 3.0 64.3 1.0
O2 A:CLM501 3.1 55.3 1.0
OG A:SER232 3.4 48.1 1.0
CG2 A:ILE327 3.7 52.2 1.0
N2 A:CLM501 3.7 65.0 1.0
O A:HOH604 3.7 96.5 1.0
CG A:ASN331 4.1 60.9 1.0
CB A:SER232 4.2 44.7 1.0
C3 A:CLM501 4.3 60.0 1.0
CB A:ASN331 4.3 57.3 1.0
O4 A:CLM501 4.5 60.5 1.0

Chlorine binding site 2 out of 2 in 6vs0

Go back to Chlorine Binding Sites List in 6vs0
Chlorine binding site 2 out of 2 in the Protein B


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Protein B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:64.5
occ:1.00
CL2 A:CLM501 0.0 64.5 1.0
C1 A:CLM501 1.8 55.3 1.0
C2 A:CLM501 2.8 55.3 1.0
N2 A:CLM501 2.9 65.0 1.0
CL1 A:CLM501 2.9 62.4 1.0
O4 A:CLM501 3.3 60.5 1.0
C3 A:CLM501 3.9 60.0 1.0
O2 A:CLM501 3.9 55.3 1.0
C4 A:CLM501 4.0 58.1 1.0
O A:HOH604 4.5 96.5 1.0
O A:HOH624 4.6 89.8 1.0
CD1 A:LEU151 5.0 70.3 1.0

Reference:

H.H.Wu, J.Symersky, M.Lu. Structure and Mechanism of A Redesigned Multidrug Transporter From the Major Facilitator Superfamily. Sci Rep V. 10 3949 2020.
ISSN: ESSN 2045-2322
PubMed: 32127561
DOI: 10.1038/S41598-020-60332-8
Page generated: Sat Dec 12 14:24:36 2020

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