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Chlorine in PDB 6w2y: Cryoem Structure of GABAB1B Homodimer

Other elements in 6w2y:

The structure of Cryoem Structure of GABAB1B Homodimer also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryoem Structure of GABAB1B Homodimer (pdb code 6w2y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Cryoem Structure of GABAB1B Homodimer, PDB code: 6w2y:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6w2y

Go back to Chlorine Binding Sites List in 6w2y
Chlorine binding site 1 out of 4 in the Cryoem Structure of GABAB1B Homodimer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryoem Structure of GABAB1B Homodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl907

b:38.2
occ:1.00
CL1 A:SGG907 0.0 38.2 1.0
C13 A:SGG907 1.8 38.2 1.0
C04 A:SGG907 2.7 38.2 1.0
C12 A:SGG907 2.8 38.2 1.0
CL2 A:SGG907 3.2 38.2 1.0
C07 A:SGG907 4.0 38.2 1.0
C11 A:SGG907 4.0 38.2 1.0
CB A:TRP278 4.1 35.5 1.0
O A:TRP278 4.4 35.5 1.0
C24 A:SGG907 4.5 38.2 1.0
C09 A:SGG907 4.5 38.2 1.0
C A:TRP278 4.8 35.5 1.0
C25 A:SGG907 4.9 38.2 1.0
CA A:TRP278 5.0 35.5 1.0

Chlorine binding site 2 out of 4 in 6w2y

Go back to Chlorine Binding Sites List in 6w2y
Chlorine binding site 2 out of 4 in the Cryoem Structure of GABAB1B Homodimer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryoem Structure of GABAB1B Homodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl907

b:38.2
occ:1.00
CL2 A:SGG907 0.0 38.2 1.0
C04 A:SGG907 1.8 38.2 1.0
C13 A:SGG907 2.7 38.2 1.0
C07 A:SGG907 2.8 38.2 1.0
CL1 A:SGG907 3.2 38.2 1.0
OE1 A:GLN348 3.2 38.1 1.0
C09 A:SGG907 4.0 38.2 1.0
C12 A:SGG907 4.0 38.2 1.0
CD A:GLN348 4.4 38.1 1.0
OE2 A:GLU349 4.4 37.4 1.0
O A:TRP278 4.5 35.5 1.0
C11 A:SGG907 4.5 38.2 1.0
CD1 A:TRP65 4.6 34.4 1.0
NE1 A:TRP65 4.6 34.4 1.0
CB A:TRP278 4.8 35.5 1.0

Chlorine binding site 3 out of 4 in 6w2y

Go back to Chlorine Binding Sites List in 6w2y
Chlorine binding site 3 out of 4 in the Cryoem Structure of GABAB1B Homodimer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryoem Structure of GABAB1B Homodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl907

b:32.2
occ:1.00
CL1 B:SGG907 0.0 32.2 1.0
C13 B:SGG907 1.8 32.2 1.0
C12 B:SGG907 2.7 32.2 1.0
C04 B:SGG907 2.8 32.2 1.0
CL2 B:SGG907 3.2 32.2 1.0
C11 B:SGG907 4.0 32.2 1.0
C07 B:SGG907 4.0 32.2 1.0
CB B:TRP278 4.2 32.5 1.0
C24 B:SGG907 4.3 32.2 1.0
O B:TRP278 4.5 32.5 1.0
C09 B:SGG907 4.6 32.2 1.0
C25 B:SGG907 4.6 32.2 1.0
C B:TRP278 4.7 32.5 1.0

Chlorine binding site 4 out of 4 in 6w2y

Go back to Chlorine Binding Sites List in 6w2y
Chlorine binding site 4 out of 4 in the Cryoem Structure of GABAB1B Homodimer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryoem Structure of GABAB1B Homodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl907

b:32.2
occ:1.00
CL2 B:SGG907 0.0 32.2 1.0
C04 B:SGG907 1.8 32.2 1.0
C07 B:SGG907 2.7 32.2 1.0
C13 B:SGG907 2.8 32.2 1.0
CL1 B:SGG907 3.2 32.2 1.0
C09 B:SGG907 4.0 32.2 1.0
C12 B:SGG907 4.0 32.2 1.0
CD1 B:TRP65 4.3 31.1 1.0
OE1 B:GLN348 4.5 34.6 1.0
O B:TRP278 4.5 32.5 1.0
C11 B:SGG907 4.5 32.2 1.0
NE1 B:TRP65 4.7 31.1 1.0
C24 B:SGG907 5.0 32.2 1.0

Reference:

M.M.Papasergi-Scott, M.J.Robertson, A.B.Seven, O.Panova, J.M.Mathiesen, G.Skiniotis. Structures of Metabotropic Gababreceptor. Nature V. 584 310 2020.
ISSN: ESSN 1476-4687
PubMed: 32580208
DOI: 10.1038/S41586-020-2469-4
Page generated: Mon Jul 29 16:34:44 2024

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