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Chlorine in PDB 6w7p: Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment

Enzymatic activity of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment

All present enzymatic activity of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment, PDB code: 6w7p was solved by D.Fernandez, S.Russi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.866, 78.866, 37.155, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 22

Other elements in 6w7p:

The structure of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment (pdb code 6w7p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment, PDB code: 6w7p:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6w7p

Go back to Chlorine Binding Sites List in 6w7p
Chlorine binding site 1 out of 4 in the Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:26.6
occ:1.00
 OH A:TYR23 3.0 22.1 1.0
O A:HOH357 3.2 24.7 1.0
CZ A:TYR23 3.7 20.7 1.0
CE2 A:TYR23 3.7 20.5 1.0
CA A:GLY104 4.2 21.4 1.0
O A:ARG21 4.5 25.6 1.0
N A:GLY104 4.7 21.0 1.0
CE1 A:TYR23 4.9 20.8 1.0
CD2 A:TYR23 4.9 21.1 1.0
O A:HOH329 5.0 28.4 1.0

Chlorine binding site 2 out of 4 in 6w7p

Go back to Chlorine Binding Sites List in 6w7p
Chlorine binding site 2 out of 4 in the Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:30.8
occ:1.00
 O A:HOH347 3.2 22.6 1.0
O A:HOH315 3.3 36.2 1.0
O A:HOH371 3.3 37.6 1.0
N A:THR69 3.3 23.4 1.0
O A:THR69 3.4 25.7 1.0
C A:GLY67 3.6 28.6 1.0
N A:ARG68 3.6 23.2 1.0
OG A:SER72 3.6 26.7 1.0
C A:THR69 3.6 26.4 1.0
OD1 A:ASN65 3.7 26.2 1.0
CA A:GLY67 3.7 26.9 1.0
N A:GLY67 3.8 26.4 1.0
O A:HOH367 3.9 26.5 1.0
CA A:THR69 3.9 23.9 1.0
O A:GLY67 4.1 27.5 1.0
CB A:THR69 4.2 26.4 1.0
OD1 A:ASP66 4.3 20.8 1.0
C A:ARG68 4.3 22.3 1.0
CA A:ARG68 4.4 22.6 1.0
N A:PRO70 4.4 26.7 1.0
O A:HOH416 4.7 50.2 1.0
NA A:NA201 4.7 23.9 1.0
CB A:SER72 4.8 24.5 1.0
C A:ASP66 4.8 22.7 1.0
CG A:ASN65 4.8 22.8 1.0
N A:ASP66 4.9 20.0 1.0
OG1 A:THR69 4.9 23.7 1.0
CA A:PRO70 4.9 27.8 1.0
O A:HOH349 4.9 30.4 0.5

Chlorine binding site 3 out of 4 in 6w7p

Go back to Chlorine Binding Sites List in 6w7p
Chlorine binding site 3 out of 4 in the Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:33.7
occ:1.00
 O A:HOH434 2.7 46.4 1.0
ND2 A:ASN65 3.1 25.6 1.0
CA A:GLY67 3.7 26.9 1.0
N A:GLY67 4.1 26.4 1.0
CG A:ASN65 4.1 22.8 1.0
OD1 A:ASN65 4.3 26.2 1.0
O A:HOH315 4.5 36.2 1.0
C A:ASP66 4.7 22.7 1.0
O A:HOH352 5.0 45.4 1.0

Chlorine binding site 4 out of 4 in 6w7p

Go back to Chlorine Binding Sites List in 6w7p
Chlorine binding site 4 out of 4 in the Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure Analysis of Space-Grown Lysozyme - Ground Experiment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:35.5
occ:1.00
 OG A:SER24 2.9 29.9 1.0
N A:GLY26 3.1 21.6 1.0
CB A:SER24 3.4 29.6 1.0
O A:HOH397 3.4 42.9 1.0
CA A:GLY26 3.5 21.2 1.0
CA A:GLN121 3.6 29.1 1.0
CD1 A:ILE124 3.7 41.5 1.0
CB A:GLN121 3.9 36.5 1.0
N A:GLN121 3.9 29.2 1.0
N A:LEU25 4.1 23.9 1.0
C A:SER24 4.1 25.1 1.0
C A:LEU25 4.2 24.0 1.0
CG1 A:ILE124 4.3 33.5 1.0
C A:VAL120 4.4 29.6 1.0
CA A:SER24 4.4 25.9 1.0
CG2 A:VAL120 4.4 29.5 1.0
CG A:GLN121 4.4 40.2 1.0
O A:VAL120 4.4 27.2 1.0
O A:SER24 4.5 23.8 1.0
CA A:LEU25 4.6 22.7 1.0
C A:GLY26 4.6 19.2 1.0
N A:ASN27 4.6 19.9 1.0
C A:GLN121 4.8 28.5 1.0
CB A:LEU25 5.0 23.1 1.0

Reference:

D.Fernandez, S.Russi. Protein Structural Changes on A Cubesat Under Rocket Acceleration Profile To Be Published.
Page generated: Mon Jul 29 16:40:30 2024

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