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Chlorine in PDB 6whp: Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A

Protein crystallography data

The structure of Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A, PDB code: 6whp was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.98 / 2.25
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 129.500, 129.500, 160.010, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 22.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A (pdb code 6whp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A, PDB code: 6whp:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6whp

Go back to Chlorine Binding Sites List in 6whp
Chlorine binding site 1 out of 3 in the Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl604

b:46.0
occ:1.00
O A:HOH806 3.6 47.3 1.0
CB A:CYS367 4.0 37.4 1.0
NH2 A:ARG258 4.0 39.2 1.0
SG A:CYS367 4.2 48.7 1.0
CL A:CL606 4.6 56.4 1.0
NH1 A:ARG258 4.6 41.0 1.0
CG2 A:THR363 4.7 41.7 1.0
NH2 A:ARG257 4.7 45.4 1.0
CZ A:ARG258 4.8 46.4 1.0

Chlorine binding site 2 out of 3 in 6whp

Go back to Chlorine Binding Sites List in 6whp
Chlorine binding site 2 out of 3 in the Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:49.6
occ:0.50
NH1 A:ARG222 3.0 55.6 1.0
NH1 A:ARG120 3.4 44.8 1.0
O A:HOH773 3.7 46.6 1.0
O A:HOH822 3.8 40.9 1.0
NH2 A:ARG120 4.0 42.5 1.0
CZ A:ARG222 4.1 55.1 1.0
ND1 A:HIS186 4.2 42.5 1.0
CZ A:ARG120 4.2 44.1 1.0
CG A:PRO119 4.3 42.6 1.0
NH2 A:ARG222 4.4 52.2 1.0
CZ A:PHE224 4.5 42.9 1.0
CE1 A:HIS186 4.6 40.4 1.0
CE1 A:PHE224 4.8 42.2 1.0

Chlorine binding site 3 out of 3 in 6whp

Go back to Chlorine Binding Sites List in 6whp
Chlorine binding site 3 out of 3 in the Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:56.4
occ:1.00
OG1 A:THR363 3.6 46.6 1.0
CG2 A:THR363 3.8 41.7 1.0
CB A:THR363 4.0 44.5 1.0
CD A:PRO364 4.1 50.1 1.0
CA A:THR363 4.1 48.4 1.0
CL A:CL604 4.6 46.0 1.0
SG A:CYS367 4.8 48.7 1.0
NH2 A:ARG257 4.9 45.4 1.0
N A:THR363 4.9 46.9 1.0

Reference:

J.Abendroth, S.L.Delker, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Structure of Choline Kinase From Cryptococcus Neoformans Var. Grubii Serotype A To Be Published.
Page generated: Mon Jul 29 16:44:11 2024

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