Chlorine in PDB 6whu: GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1

The binding sites of Chlorine atom in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1 (pdb code 6whu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1, PDB code: 6whu:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1001 b:0.0 occ:1.00 CLD A:QGM1001 0.0 0.0 1.0 CAS A:QGM1001 1.8 0.0 1.0 CAL A:QGM1001 2.7 0.0 1.0 CAK A:QGM1001 2.7 0.0 1.0 NE2 A:GLN426 3.1 0.0 1.0 OD2 A:ASP753 3.8 0.0 1.0 CD A:GLN426 3.9 0.0 1.0 CB A:PRO537 4.0 0.0 1.0 CG2 A:VAL756 4.0 0.0 1.0 CG A:GLN426 4.0 0.0 1.0 CAU A:QGM1001 4.0 0.0 1.0 CAV A:QGM1001 4.0 0.0 1.0 CZ A:PHE779 4.1 0.0 1.0 CG A:ASP753 4.1 0.0 1.0 CG A:PRO537 4.3 0.0 1.0 CD1 A:QGM1001 4.5 0.0 1.0 CE1 A:PHE779 4.5 0.0 1.0 OD1 A:ASP753 4.6 0.0 1.0 CB A:ASP753 4.7 0.0 1.0 OE1 A:GLN426 4.9 0.0 1.0

Chlorine binding site 2 out of 8 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1001 b:0.0 occ:1.00 CLE A:QGM1001 0.0 0.0 1.0 CAU A:QGM1001 1.8 0.0 1.0 CD1 A:QGM1001 2.7 0.0 1.0 CAK A:QGM1001 2.8 0.0 1.0 CG A:QGM1001 3.0 0.0 1.0 CZ2 A:TRP752 3.2 0.0 1.0 OAB A:QGM1001 3.4 0.0 1.0 CH2 A:TRP752 3.5 0.0 1.0 CE2 A:TRP752 3.6 0.0 1.0 ND2 A:QGM1001 3.6 0.0 1.0 CAR A:QGM1001 3.8 0.0 1.0 CAV A:QGM1001 4.0 0.0 1.0 CAS A:QGM1001 4.0 0.0 1.0 CZ3 A:TRP752 4.1 0.0 1.0 CD2 A:TRP752 4.2 0.0 1.0 NE1 A:TRP752 4.2 0.0 1.0 CB A:QGM1001 4.3 0.0 1.0 CE3 A:TRP752 4.4 0.0 1.0 CB A:ASP753 4.4 0.0 1.0 CAL A:QGM1001 4.5 0.0 1.0 CD1 A:TRP752 5.0 0.0 1.0 NAN A:QGM1001 5.0 0.0 1.0

Chlorine binding site 3 out of 8 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl901 b:0.0 occ:1.00 CL0 B:QGP901 0.0 0.0 1.0 C10 B:QGP901 1.7 0.0 1.0 OH B:TYR762 2.4 0.0 1.0 C12 B:QGP901 2.7 0.0 1.0 C15 B:QGP901 2.7 0.0 1.0 C7 B:QGP901 2.9 0.0 1.0 C8 B:QGP901 3.2 0.0 1.0 CZ B:TYR762 3.7 0.0 1.0 C6 B:QGP901 3.8 0.0 1.0 C13 B:QGP901 4.0 0.0 1.0 C11 B:QGP901 4.0 0.0 1.0 N B:QGP901 4.0 0.0 1.0 CG2 B:VAL735 4.0 0.0 1.0 CE2 B:TYR762 4.1 0.0 1.0 C9 B:QGP901 4.1 0.0 1.0 C14 B:QGP901 4.5 0.0 1.0 C5 B:QGP901 4.6 0.0 1.0 OD1 B:ASP732 4.6 0.0 1.0 CA B:QGP901 4.7 0.0 1.0 C4 B:QGP901 4.8 0.0 1.0 CB B:SER512 4.8 0.0 1.0 CE1 B:TYR762 4.8 0.0 1.0 CG B:ASP732 4.9 0.0 1.0 C16 B:QGP901 4.9 0.0 1.0

Chlorine binding site 4 out of 8 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl901 b:0.0 occ:1.00 CL6 B:QGP901 0.0 0.0 1.0 C11 B:QGP901 1.7 0.0 1.0 C14 B:QGP901 2.7 0.0 1.0 C15 B:QGP901 2.7 0.0 1.0 OE1 B:GLU413 3.4 0.0 1.0 CB B:ALA414 3.5 0.0 1.0 CD B:PRO415 3.6 0.0 1.0 N B:ALA414 3.7 0.0 1.0 C13 B:QGP901 3.9 0.0 1.0 C10 B:QGP901 4.0 0.0 1.0 CA B:ALA414 4.1 0.0 1.0 C12 B:QGP901 4.4 0.0 1.0 CG B:PRO415 4.5 0.0 1.0 CD B:GLU413 4.5 0.0 1.0 CB B:GLU413 4.6 0.0 1.0 N B:PRO415 4.7 0.0 1.0 CG2 B:VAL735 4.7 0.0 1.0 C B:GLU413 4.8 0.0 1.0 C B:ALA414 4.9 0.0 1.0 CA B:GLU413 5.0 0.0 1.0

Chlorine binding site 5 out of 8 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1001 b:0.0 occ:1.00 CLD C:QGM1001 0.0 0.0 1.0 CAS C:QGM1001 1.8 0.0 1.0 CAL C:QGM1001 2.7 0.0 1.0 CAK C:QGM1001 2.7 0.0 1.0 NE2 C:GLN426 3.1 0.0 1.0 OD2 C:ASP753 3.7 0.0 1.0 CD C:GLN426 3.9 0.0 1.0 CB C:PRO537 4.0 0.0 1.0 CG2 C:VAL756 4.0 0.0 1.0 CAU C:QGM1001 4.0 0.0 1.0 CAV C:QGM1001 4.0 0.0 1.0 CZ C:PHE779 4.1 0.0 1.0 CG C:GLN426 4.1 0.0 1.0 CG C:ASP753 4.1 0.0 1.0 CG C:PRO537 4.3 0.0 1.0 OD1 C:ASP753 4.5 0.0 1.0 CD1 C:QGM1001 4.5 0.0 1.0 CE1 C:PHE779 4.5 0.0 1.0 CB C:ASP753 4.7 0.0 1.0 OE1 C:GLN426 4.9 0.0 1.0 CE2 C:PHE779 5.0 0.0 1.0

Chlorine binding site 6 out of 8 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1001 b:0.0 occ:1.00 CLE C:QGM1001 0.0 0.0 1.0 CAU C:QGM1001 1.8 0.0 1.0 CD1 C:QGM1001 2.7 0.0 1.0 CAK C:QGM1001 2.8 0.0 1.0 CG C:QGM1001 3.0 0.0 1.0 CZ2 C:TRP752 3.2 0.0 1.0 OAB C:QGM1001 3.4 0.0 1.0 CH2 C:TRP752 3.5 0.0 1.0 CE2 C:TRP752 3.6 0.0 1.0 ND2 C:QGM1001 3.6 0.0 1.0 CAR C:QGM1001 3.8 0.0 1.0 CAV C:QGM1001 4.0 0.0 1.0 CAS C:QGM1001 4.0 0.0 1.0 CZ3 C:TRP752 4.1 0.0 1.0 CD2 C:TRP752 4.2 0.0 1.0 NE1 C:TRP752 4.2 0.0 1.0 CB C:QGM1001 4.3 0.0 1.0 CB C:ASP753 4.4 0.0 1.0 CE3 C:TRP752 4.4 0.0 1.0 CAL C:QGM1001 4.5 0.0 1.0 OD2 C:ASP753 5.0 0.0 1.0 CD1 C:TRP752 5.0 0.0 1.0 N C:ASP753 5.0 0.0 1.0 CG C:TRP752 5.0 0.0 1.0

Chlorine binding site 7 out of 8 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl901 b:0.0 occ:1.00 CL0 D:QGP901 0.0 0.0 1.0 C10 D:QGP901 1.7 0.0 1.0 OH D:TYR762 2.4 0.0 1.0 C12 D:QGP901 2.7 0.0 1.0 C15 D:QGP901 2.7 0.0 1.0 C7 D:QGP901 2.9 0.0 1.0 C8 D:QGP901 3.2 0.0 1.0 CZ D:TYR762 3.7 0.0 1.0 C6 D:QGP901 3.8 0.0 1.0 C13 D:QGP901 4.0 0.0 1.0 C11 D:QGP901 4.0 0.0 1.0 N D:QGP901 4.0 0.0 1.0 CG2 D:VAL735 4.0 0.0 1.0 CE2 D:TYR762 4.1 0.0 1.0 C9 D:QGP901 4.1 0.0 1.0 C14 D:QGP901 4.5 0.0 1.0 C5 D:QGP901 4.6 0.0 1.0 OD1 D:ASP732 4.6 0.0 1.0 CA D:QGP901 4.7 0.0 1.0 C4 D:QGP901 4.8 0.0 1.0 CB D:SER512 4.8 0.0 1.0 CE1 D:TYR762 4.8 0.0 1.0 CG D:ASP732 4.9 0.0 1.0 C16 D:QGP901 5.0 0.0 1.0

Chlorine binding site 8 out of 8 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl901 b:0.0 occ:1.00 CL6 D:QGP901 0.0 0.0 1.0 C11 D:QGP901 1.7 0.0 1.0 C14 D:QGP901 2.7 0.0 1.0 C15 D:QGP901 2.7 0.0 1.0 OE1 D:GLU413 3.4 0.0 1.0 CB D:ALA414 3.5 0.0 1.0 CD D:PRO415 3.6 0.0 1.0 N D:ALA414 3.7 0.0 1.0 C13 D:QGP901 3.9 0.0 1.0 C10 D:QGP901 4.0 0.0 1.0 CA D:ALA414 4.1 0.0 1.0 C12 D:QGP901 4.4 0.0 1.0 CG D:PRO415 4.5 0.0 1.0 CD D:GLU413 4.5 0.0 1.0 CB D:GLU413 4.6 0.0 1.0 N D:PRO415 4.7 0.0 1.0 CG2 D:VAL735 4.7 0.0 1.0 C D:GLU413 4.8 0.0 1.0 C D:ALA414 4.9 0.0 1.0 CA D:GLU413 5.0 0.0 1.0

T.H.Chou, N.Tajima, A.Romero-Hernandez, H.Furukawa. Structural Basis of Functional Transitions in Mammalian Nmda Receptors. Cell V. 182 357 2020.
ISSN: ISSN 1097-4172
PubMed: 32610085
DOI: 10.1016/J.CELL.2020.05.052