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Chlorine in PDB 6whv: GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2 (pdb code 6whv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2, PDB code: 6whv:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 6whv

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Chlorine binding site 1 out of 6 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl901

b:97.5
occ:1.00
 CL0 B:QGP901 0.0 97.5 1.0
C10 B:QGP901 1.7 97.5 1.0
OH B:TYR762 2.5 64.6 1.0
C15 B:QGP901 2.7 97.5 1.0
C12 B:QGP901 2.7 97.5 1.0
C7 B:QGP901 3.0 97.5 1.0
C8 B:QGP901 3.1 97.5 1.0
N B:QGP901 3.5 97.5 1.0
CZ B:TYR762 3.6 64.6 1.0
C6 B:QGP901 3.9 97.5 1.0
C11 B:QGP901 4.0 97.5 1.0
C13 B:QGP901 4.0 97.5 1.0
C9 B:QGP901 4.1 97.5 1.0
CE2 B:TYR762 4.3 64.6 1.0
C14 B:QGP901 4.5 97.5 1.0
CE1 B:TYR762 4.5 64.6 1.0
CA B:QGP901 4.7 97.5 1.0
CB B:SER512 4.8 75.9 1.0
C5 B:QGP901 4.8 97.5 1.0
C16 B:QGP901 4.8 97.5 1.0
C4 B:QGP901 4.9 97.5 1.0

Chlorine binding site 2 out of 6 in 6whv

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Chlorine binding site 2 out of 6 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl901

b:97.5
occ:1.00
 CL6 B:QGP901 0.0 97.5 1.0
C11 B:QGP901 1.7 97.5 1.0
C14 B:QGP901 2.7 97.5 1.0
C15 B:QGP901 2.7 97.5 1.0
OE1 B:GLU413 3.2 97.5 1.0
OE2 B:GLU413 3.3 97.5 1.0
CD B:PRO415 3.6 89.4 1.0
CD B:GLU413 3.7 97.5 1.0
CA B:ALA414 3.7 92.7 1.0
CB B:ALA414 3.9 92.7 1.0
C10 B:QGP901 4.0 97.5 1.0
C13 B:QGP901 4.0 97.5 1.0
O B:GLU413 4.3 97.5 1.0
C12 B:QGP901 4.5 97.5 1.0
N B:PRO415 4.6 89.4 1.0
N B:ALA414 4.6 92.7 1.0
CG2 B:VAL735 4.6 84.2 1.0
C B:ALA414 4.7 92.7 1.0
C B:GLU413 4.7 97.5 1.0
CG B:PRO415 4.8 89.4 1.0

Chlorine binding site 3 out of 6 in 6whv

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Chlorine binding site 3 out of 6 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1001

b:0.0
occ:1.00
 CLD C:QGM1001 0.0 0.0 1.0
CAS C:QGM1001 1.8 0.0 1.0
NE2 C:GLN426 2.5 68.8 1.0
CAK C:QGM1001 2.7 0.0 1.0
CAL C:QGM1001 2.8 0.0 1.0
CD C:GLN426 3.2 68.8 1.0
CB C:PRO537 3.3 59.4 1.0
CG C:GLN426 3.4 68.8 1.0
CG C:PRO537 3.4 59.4 1.0
CAU C:QGM1001 4.0 0.0 1.0
CAV C:QGM1001 4.1 0.0 1.0
CD2 C:PHE429 4.2 64.7 1.0
OE1 C:GLN426 4.2 68.8 1.0
CZ C:PHE779 4.3 54.4 1.0
CG2 C:VAL756 4.5 65.4 1.0
CD1 C:QGM1001 4.5 0.0 1.0
CB C:GLN426 4.6 68.8 1.0
CE1 C:PHE779 4.6 54.4 1.0
CE2 C:PHE429 4.6 64.7 1.0
OD2 C:ASP753 4.8 66.7 1.0
CA C:PRO537 4.8 59.4 1.0
CD C:PRO537 4.8 59.4 1.0

Chlorine binding site 4 out of 6 in 6whv

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Chlorine binding site 4 out of 6 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1001

b:0.0
occ:1.00
 CLE C:QGM1001 0.0 0.0 1.0
CAU C:QGM1001 1.8 0.0 1.0
NE1 C:TRP752 2.5 62.8 1.0
CD1 C:QGM1001 2.7 0.0 1.0
CAK C:QGM1001 2.8 0.0 1.0
CG C:QGM1001 2.9 0.0 1.0
CE2 C:TRP752 3.1 62.8 1.0
OD2 C:ASP753 3.1 66.7 1.0
CZ2 C:TRP752 3.1 62.8 1.0
OAB C:QGM1001 3.2 0.0 1.0
ND2 C:QGM1001 3.4 0.0 1.0
CAR C:QGM1001 3.5 0.0 1.0
CD1 C:TRP752 3.7 62.8 1.0
CAV C:QGM1001 4.0 0.0 1.0
CAS C:QGM1001 4.0 0.0 1.0
CG C:ASP753 4.2 66.7 1.0
CB C:QGM1001 4.4 0.0 1.0
CD2 C:TRP752 4.4 62.8 1.0
OD1 C:ASP753 4.5 66.7 1.0
CH2 C:TRP752 4.5 62.8 1.0
CAL C:QGM1001 4.5 0.0 1.0
OG C:SER708 4.6 84.4 1.0
NAN C:QGM1001 4.6 0.0 1.0
CG C:TRP752 4.7 62.8 1.0

Chlorine binding site 5 out of 6 in 6whv

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Chlorine binding site 5 out of 6 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl901

b:0.3
occ:1.00
 CL0 D:QGP901 0.0 0.3 1.0
C10 D:QGP901 1.7 0.3 1.0
C15 D:QGP901 2.7 0.3 1.0
C12 D:QGP901 2.7 0.3 1.0
OH D:TYR762 2.7 66.4 1.0
C7 D:QGP901 3.0 0.3 1.0
C8 D:QGP901 3.2 0.3 1.0
CZ D:TYR762 3.7 66.4 1.0
C11 D:QGP901 4.0 0.3 1.0
N D:QGP901 4.0 0.3 1.0
C13 D:QGP901 4.0 0.3 1.0
CB D:SER512 4.0 79.3 1.0
C6 D:QGP901 4.0 0.3 1.0
C9 D:QGP901 4.2 0.3 1.0
CE2 D:TYR762 4.2 66.4 1.0
C14 D:QGP901 4.5 0.3 1.0
CE1 D:TYR762 4.5 66.4 1.0
OE1 D:GLU413 4.6 0.0 1.0
O D:SER512 4.8 79.3 1.0
OG D:SER512 4.8 79.3 1.0
C16 D:QGP901 4.9 0.3 1.0
C5 D:QGP901 4.9 0.3 1.0
C D:SER512 5.0 79.3 1.0
C4 D:QGP901 5.0 0.3 1.0

Chlorine binding site 6 out of 6 in 6whv

Go back to Chlorine Binding Sites List in 6whv
Chlorine binding site 6 out of 6 in the GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of GLUN1B-GLUN2B Nmda Receptor in Complex with Sdz 220-040 and L689,560, Class 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl901

b:0.3
occ:1.00
 CL6 D:QGP901 0.0 0.3 1.0
C11 D:QGP901 1.7 0.3 1.0
C14 D:QGP901 2.7 0.3 1.0
C15 D:QGP901 2.7 0.3 1.0
OE2 D:GLU413 3.0 0.0 1.0
CB D:ALA414 3.4 92.2 1.0
OE1 D:GLU413 3.5 0.0 1.0
CD D:GLU413 3.6 0.0 1.0
CA D:ALA414 3.9 92.2 1.0
C13 D:QGP901 3.9 0.3 1.0
C10 D:QGP901 4.0 0.3 1.0
CD D:PRO415 4.3 87.6 1.0
CG2 D:VAL735 4.3 80.2 1.0
C12 D:QGP901 4.5 0.3 1.0
N D:ALA414 4.7 92.2 1.0
CG1 D:VAL735 4.9 80.2 1.0
O D:GLU413 5.0 0.0 1.0
C D:ALA414 5.0 92.2 1.0

Reference:

T.H.Chou, N.Tajima, A.Romero-Hernandez, H.Furukawa. Structural Basis of Functional Transitions in Mammalian Nmda Receptors. Cell V. 182 357 2020.
ISSN: ISSN 1097-4172
PubMed: 32610085
DOI: 10.1016/J.CELL.2020.05.052
Page generated: Mon Jul 29 16:44:37 2024

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