Chlorine in PDB 6whx: GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2

The binding sites of Chlorine atom in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2 (pdb code 6whx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2, PDB code: 6whx:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl901 b:69.8 occ:1.00 CL0 B:QGP901 0.0 69.8 1.0 C10 B:QGP901 1.7 52.0 1.0 C12 B:QGP901 2.7 47.0 1.0 C15 B:QGP901 2.7 51.4 1.0 C7 B:QGP901 2.9 41.4 1.0 OH B:TYR762 2.9 0.0 1.0 CG2 B:VAL735 3.4 0.0 1.0 C6 B:QGP901 3.4 38.5 1.0 C8 B:QGP901 3.5 38.5 1.0 OD2 B:ASP732 3.8 0.0 1.0 C13 B:QGP901 4.0 42.2 1.0 C11 B:QGP901 4.0 61.5 1.0 CZ B:TYR762 4.2 0.0 1.0 C5 B:QGP901 4.3 39.4 1.0 C9 B:QGP901 4.4 39.9 1.0 C14 B:QGP901 4.5 61.5 1.0 CG B:ASP732 4.6 0.0 1.0 CE1 B:TYR762 4.7 0.0 1.0 C4 B:QGP901 4.7 42.2 1.0 CB B:VAL735 4.8 0.0 1.0 CB B:ASP732 4.9 0.0 1.0

Chlorine binding site 2 out of 4 in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl901 b:87.0 occ:1.00 CL6 B:QGP901 0.0 87.0 1.0 C11 B:QGP901 1.7 61.5 1.0 C14 B:QGP901 2.7 61.5 1.0 C15 B:QGP901 2.7 51.4 1.0 CD B:PRO415 3.4 0.0 1.0 CG1 B:VAL735 3.5 0.0 1.0 CB B:ALA414 3.6 0.0 1.0 CG B:PRO415 3.8 0.0 1.0 C13 B:QGP901 4.0 42.2 1.0 C10 B:QGP901 4.0 52.0 1.0 CG B:GLU413 4.2 0.0 1.0 N B:ALA414 4.3 0.0 1.0 N B:PRO415 4.4 0.0 1.0 CA B:ALA414 4.4 0.0 1.0 C12 B:QGP901 4.5 47.0 1.0 OE2 B:GLU413 4.7 0.0 1.0 CB B:VAL735 4.8 0.0 1.0 CB B:PRO415 4.9 0.0 1.0 C B:ALA414 4.9 0.0 1.0 CG2 B:VAL735 4.9 0.0 1.0 CD B:GLU413 5.0 0.0 1.0

Chlorine binding site 3 out of 4 in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl901 b:69.8 occ:1.00 CL0 D:QGP901 0.0 69.8 1.0 C10 D:QGP901 1.7 52.0 1.0 C15 D:QGP901 2.7 51.4 1.0 C12 D:QGP901 2.7 47.0 1.0 C7 D:QGP901 3.1 41.4 1.0 C8 D:QGP901 3.1 38.5 1.0 OH D:TYR762 3.2 0.0 1.0 CG2 D:VAL735 3.8 0.0 1.0 C11 D:QGP901 4.0 61.5 1.0 C13 D:QGP901 4.0 42.2 1.0 CZ D:TYR762 4.2 0.0 1.0 C6 D:QGP901 4.2 38.5 1.0 C9 D:QGP901 4.2 39.9 1.0 CE2 D:TYR762 4.5 0.0 1.0 C14 D:QGP901 4.5 61.5 1.0 CB D:SER512 4.8 0.0 1.0 OG D:SER512 4.8 0.0 1.0 C16 D:QGP901 4.8 35.6 1.0

Chlorine binding site 4 out of 4 in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN2B Antagonist Sdz 220- 040, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl901 b:87.0 occ:1.00 CL6 D:QGP901 0.0 87.0 1.0 C11 D:QGP901 1.7 61.5 1.0 C14 D:QGP901 2.7 61.5 1.0 C15 D:QGP901 2.7 51.4 1.0 C13 D:QGP901 4.0 42.2 1.0 C10 D:QGP901 4.0 52.0 1.0 CD D:PRO415 4.2 0.0 1.0 O D:GLU413 4.3 0.0 1.0 CG1 D:VAL735 4.4 0.0 1.0 C12 D:QGP901 4.5 47.0 1.0 CG2 D:VAL735 4.7 0.0 1.0 N D:PRO415 5.0 0.0 1.0 CG D:PRO415 5.0 0.0 1.0

T.H.Chou, N.Tajima, A.Romero-Hernandez, H.Furukawa. Structural Basis of Functional Transitions in Mammalian Nmda Receptors. Cell V. 182 357 2020.
ISSN: ISSN 1097-4172
PubMed: 32610085
DOI: 10.1016/J.CELL.2020.05.052