Chlorine in PDB 6why: GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1

The binding sites of Chlorine atom in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1 (pdb code 6why). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1, PDB code: 6why:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1001 b:0.0 occ:1.00 CLD A:QGM1001 0.0 0.0 1.0 CAS A:QGM1001 1.8 0.0 1.0 CAL A:QGM1001 2.7 0.0 1.0 CAK A:QGM1001 2.8 0.0 1.0 NE2 A:GLN426 3.2 0.0 1.0 CG A:GLN426 3.4 0.0 1.0 CB A:PRO537 3.5 0.0 1.0 CG A:PRO537 3.6 0.0 1.0 CD A:GLN426 3.6 0.0 1.0 CG2 A:VAL756 3.6 0.0 1.0 CAV A:QGM1001 4.0 0.0 1.0 CAU A:QGM1001 4.0 0.0 1.0 CB A:GLN426 4.4 0.0 1.0 CD A:PRO537 4.5 0.0 1.0 OE1 A:GLN426 4.5 0.0 1.0 CD1 A:QGM1001 4.5 0.0 1.0 O A:PRO537 4.7 0.0 1.0 CB A:VAL756 4.8 0.0 1.0 CD1 A:PHE429 4.8 0.0 1.0 CG1 A:VAL756 4.9 0.0 1.0 CA A:PRO537 4.9 0.0 1.0 CZ A:PHE779 5.0 0.0 1.0

Chlorine binding site 2 out of 4 in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1001 b:0.0 occ:1.00 CLE A:QGM1001 0.0 0.0 1.0 CAU A:QGM1001 1.8 0.0 1.0 CD1 A:QGM1001 2.8 0.0 1.0 CAK A:QGM1001 2.8 0.0 1.0 CZ2 A:TRP752 3.1 0.0 1.0 CG A:QGM1001 3.1 0.0 1.0 CE2 A:TRP752 3.2 0.0 1.0 NE1 A:TRP752 3.4 0.0 1.0 OD2 A:ASP753 3.5 0.0 1.0 OAB A:QGM1001 3.6 0.0 1.0 CH2 A:TRP752 3.9 0.0 1.0 ND2 A:QGM1001 3.9 0.0 1.0 CAV A:QGM1001 4.0 0.0 1.0 CAS A:QGM1001 4.1 0.0 1.0 CAR A:QGM1001 4.1 0.0 1.0 CD2 A:TRP752 4.2 0.0 1.0 CD1 A:TRP752 4.3 0.0 1.0 CG A:ASP753 4.4 0.0 1.0 CB A:QGM1001 4.4 0.0 1.0 CAL A:QGM1001 4.6 0.0 1.0 CZ3 A:TRP752 4.7 0.0 1.0 CG A:TRP752 4.7 0.0 1.0 OXT A:QGM1001 4.8 0.0 1.0 OD1 A:ASP753 4.8 0.0 1.0 CE3 A:TRP752 4.8 0.0 1.0

Chlorine binding site 3 out of 4 in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1001 b:0.0 occ:1.00 CLD C:QGM1001 0.0 0.0 1.0 CAS C:QGM1001 1.8 0.0 1.0 CAL C:QGM1001 2.7 0.0 1.0 CAK C:QGM1001 2.8 0.0 1.0 NE2 C:GLN426 3.2 0.0 1.0 CG C:GLN426 3.4 0.0 1.0 CB C:PRO537 3.5 0.0 1.0 CG C:PRO537 3.6 0.0 1.0 CD C:GLN426 3.6 0.0 1.0 CG2 C:VAL756 3.6 0.0 1.0 CAV C:QGM1001 4.0 0.0 1.0 CAU C:QGM1001 4.0 0.0 1.0 CB C:GLN426 4.4 0.0 1.0 CD C:PRO537 4.5 0.0 1.0 OE1 C:GLN426 4.5 0.0 1.0 CD1 C:QGM1001 4.5 0.0 1.0 O C:PRO537 4.7 0.0 1.0 CB C:VAL756 4.8 0.0 1.0 CD1 C:PHE429 4.8 0.0 1.0 CG1 C:VAL756 4.9 0.0 1.0 CA C:PRO537 4.9 0.0 1.0 CZ C:PHE779 5.0 0.0 1.0

Chlorine binding site 4 out of 4 in the GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of GLUN1B-GLUN2B Nmda Receptor in Complex with GLUN1 Antagonist L689,560, Class 1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1001 b:0.0 occ:1.00 CLE C:QGM1001 0.0 0.0 1.0 CAU C:QGM1001 1.8 0.0 1.0 CD1 C:QGM1001 2.8 0.0 1.0 CAK C:QGM1001 2.8 0.0 1.0 CZ2 C:TRP752 3.1 0.0 1.0 CG C:QGM1001 3.1 0.0 1.0 CE2 C:TRP752 3.2 0.0 1.0 NE1 C:TRP752 3.4 0.0 1.0 OD2 C:ASP753 3.5 0.0 1.0 OAB C:QGM1001 3.6 0.0 1.0 CH2 C:TRP752 3.9 0.0 1.0 ND2 C:QGM1001 3.9 0.0 1.0 CAV C:QGM1001 4.0 0.0 1.0 CAS C:QGM1001 4.1 0.0 1.0 CAR C:QGM1001 4.1 0.0 1.0 CD2 C:TRP752 4.2 0.0 1.0 CD1 C:TRP752 4.3 0.0 1.0 CG C:ASP753 4.4 0.0 1.0 CB C:QGM1001 4.4 0.0 1.0 CAL C:QGM1001 4.6 0.0 1.0 CZ3 C:TRP752 4.7 0.0 1.0 CG C:TRP752 4.7 0.0 1.0 OXT C:QGM1001 4.8 0.0 1.0 OD1 C:ASP753 4.8 0.0 1.0 CE3 C:TRP752 4.8 0.0 1.0

T.H.Chou, N.Tajima, A.Romero-Hernandez, H.Furukawa. Structural Basis of Functional Transitions in Mammalian Nmda Receptors. Cell V. 182 357 2020.
ISSN: ISSN 1097-4172
PubMed: 32610085
DOI: 10.1016/J.CELL.2020.05.052