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Chlorine in PDB 6wmn: Human Poly-N-Acetyl-Lactosamine Synthase Structure Demonstrates A Modular Assembly of Catalytic Subsites For Gt-A Glycosyltransferases

Enzymatic activity of Human Poly-N-Acetyl-Lactosamine Synthase Structure Demonstrates A Modular Assembly of Catalytic Subsites For Gt-A Glycosyltransferases

All present enzymatic activity of Human Poly-N-Acetyl-Lactosamine Synthase Structure Demonstrates A Modular Assembly of Catalytic Subsites For Gt-A Glycosyltransferases:
2.4.1.149;

Protein crystallography data

The structure of Human Poly-N-Acetyl-Lactosamine Synthase Structure Demonstrates A Modular Assembly of Catalytic Subsites For Gt-A Glycosyltransferases, PDB code: 6wmn was solved by R.Kadirvelraj, Z.A.Wood, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.07 / 2.04
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.210, 79.810, 157.790, 90.00, 97.89, 90.00
R / Rfree (%) 21.8 / 23.2

Other elements in 6wmn:

The structure of Human Poly-N-Acetyl-Lactosamine Synthase Structure Demonstrates A Modular Assembly of Catalytic Subsites For Gt-A Glycosyltransferases also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Poly-N-Acetyl-Lactosamine Synthase Structure Demonstrates A Modular Assembly of Catalytic Subsites For Gt-A Glycosyltransferases (pdb code 6wmn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Human Poly-N-Acetyl-Lactosamine Synthase Structure Demonstrates A Modular Assembly of Catalytic Subsites For Gt-A Glycosyltransferases, PDB code: 6wmn:

Chlorine binding site 1 out of 1 in 6wmn

Go back to Chlorine Binding Sites List in 6wmn
Chlorine binding site 1 out of 1 in the Human Poly-N-Acetyl-Lactosamine Synthase Structure Demonstrates A Modular Assembly of Catalytic Subsites For Gt-A Glycosyltransferases


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Poly-N-Acetyl-Lactosamine Synthase Structure Demonstrates A Modular Assembly of Catalytic Subsites For Gt-A Glycosyltransferases within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl407

b:57.4
occ:1.00
 N C:ILE73 3.1 78.5 1.0
N C:PRO72 3.4 69.2 1.0
CD C:PRO72 3.4 69.3 1.0
C C:ASN71 3.5 69.3 1.0
CA C:ASN71 3.6 66.8 1.0
N C:LEU74 3.6 82.2 1.0
CB C:ILE73 3.7 85.4 1.0
CA C:ILE73 3.8 83.7 1.0
CG C:LEU74 4.0 83.3 1.0
CD1 C:LEU74 4.0 78.1 1.0
C C:PRO72 4.1 76.4 1.0
CG1 C:ILE73 4.1 86.6 1.0
CB C:ASN71 4.1 66.7 1.0
CA C:PRO72 4.2 71.7 1.0
C C:ILE73 4.3 83.8 1.0
O C:ASN71 4.3 69.7 1.0
CB C:LEU74 4.5 77.1 1.0
CG C:PRO72 4.5 70.9 1.0
CD1 C:ILE73 4.6 89.8 1.0
CB C:PRO72 4.6 73.4 1.0
CA C:LEU74 4.7 83.2 1.0
OD1 C:ASN71 4.7 68.4 1.0
N C:ASN71 4.9 61.8 1.0
CG C:ASN71 4.9 65.5 1.0
CG2 C:ILE73 5.0 90.3 1.0
O C:TYR70 5.0 66.7 1.0

Reference:

R.Kadirvelraj, J.Y.Yang, H.W.Kim, J.H.Sanders, K.W.Moremen, Z.A.Wood. Comparison of Human Poly-N-Acetyl-Lactosamine Synthase Structure with Gt-A Fold Glycosyltransferases Supports A Modular Assembly of Catalytic Subsites. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 33229435
DOI: 10.1074/JBC.RA120.015305
Page generated: Mon Jul 29 16:47:40 2024

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