Chlorine in PDB 6wt2: Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis
Protein crystallography data
The structure of Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis, PDB code: 6wt2
was solved by
Y.Kim,
N.Maltseva,
M.Endres,
T.Crofts,
A.Joachimiak,
Center For Structuralgenomics Of Infectious Diseases (Csgid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.17 /
1.75
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.556,
70.167,
85.624,
90.00,
89.96,
90.00
|
R / Rfree (%)
|
19.3 /
21.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis
(pdb code 6wt2). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis, PDB code: 6wt2:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 6wt2
Go back to
Chlorine Binding Sites List in 6wt2
Chlorine binding site 1 out
of 4 in the Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:32.5
occ:1.00
|
O
|
A:HOH461
|
2.9
|
29.3
|
1.0
|
N
|
A:ARG20
|
3.2
|
25.8
|
1.0
|
O
|
A:HOH447
|
3.4
|
24.4
|
1.0
|
N
|
A:HIS21
|
3.6
|
27.4
|
1.0
|
CD2
|
A:HIS21
|
3.8
|
39.3
|
1.0
|
CA
|
A:ARG20
|
4.0
|
26.5
|
1.0
|
CG1
|
A:ILE206
|
4.0
|
35.4
|
1.0
|
CA
|
A:CYS19
|
4.0
|
23.7
|
1.0
|
C
|
A:CYS19
|
4.1
|
27.5
|
1.0
|
CB
|
A:ARG20
|
4.2
|
28.6
|
1.0
|
CB
|
A:HIS21
|
4.2
|
29.8
|
1.0
|
C
|
A:ARG20
|
4.2
|
27.6
|
1.0
|
CD1
|
A:ILE206
|
4.2
|
31.6
|
1.0
|
CG
|
A:HIS21
|
4.3
|
36.3
|
1.0
|
SG
|
A:CYS19
|
4.3
|
30.8
|
1.0
|
CA
|
A:HIS21
|
4.4
|
27.6
|
1.0
|
O
|
A:HIS21
|
4.5
|
28.0
|
1.0
|
O
|
A:SER18
|
4.6
|
25.5
|
1.0
|
CB
|
A:CYS19
|
4.7
|
23.9
|
1.0
|
CD
|
A:ARG20
|
4.7
|
35.0
|
1.0
|
O
|
A:HOH473
|
4.7
|
29.6
|
1.0
|
NE2
|
A:GLN204
|
4.8
|
48.9
|
1.0
|
NE2
|
A:HIS21
|
4.9
|
38.8
|
1.0
|
C
|
A:HIS21
|
4.9
|
26.6
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 6wt2
Go back to
Chlorine Binding Sites List in 6wt2
Chlorine binding site 2 out
of 4 in the Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:32.8
occ:1.00
|
O
|
B:HOH455
|
3.1
|
23.9
|
1.0
|
O
|
B:HOH482
|
3.2
|
27.0
|
1.0
|
N
|
B:ARG20
|
3.2
|
23.5
|
1.0
|
N
|
B:HIS21
|
3.5
|
28.3
|
1.0
|
CD2
|
B:HIS21
|
3.6
|
30.6
|
1.0
|
CB
|
B:HIS21
|
4.0
|
25.7
|
1.0
|
CA
|
B:ARG20
|
4.0
|
21.2
|
1.0
|
CG1
|
B:ILE206
|
4.0
|
29.9
|
1.0
|
CD1
|
B:ILE206
|
4.1
|
23.6
|
1.0
|
CA
|
B:CYS19
|
4.1
|
20.0
|
1.0
|
CG
|
B:HIS21
|
4.1
|
27.6
|
1.0
|
C
|
B:CYS19
|
4.1
|
23.4
|
1.0
|
C
|
B:ARG20
|
4.2
|
26.1
|
1.0
|
CB
|
B:ARG20
|
4.2
|
21.6
|
1.0
|
CA
|
B:HIS21
|
4.3
|
25.0
|
1.0
|
SG
|
B:CYS19
|
4.4
|
25.7
|
1.0
|
O
|
B:HIS21
|
4.4
|
25.8
|
1.0
|
O
|
B:SER18
|
4.7
|
21.2
|
1.0
|
O
|
B:HOH461
|
4.7
|
35.5
|
1.0
|
CB
|
B:CYS19
|
4.8
|
24.0
|
1.0
|
NE2
|
B:GLN204
|
4.8
|
43.5
|
1.0
|
NE2
|
B:HIS21
|
4.8
|
35.8
|
1.0
|
CD
|
B:ARG20
|
4.8
|
28.8
|
1.0
|
C
|
B:HIS21
|
4.9
|
23.9
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 6wt2
Go back to
Chlorine Binding Sites List in 6wt2
Chlorine binding site 3 out
of 4 in the Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl303
b:31.0
occ:1.00
|
O
|
C:HOH472
|
3.0
|
31.1
|
1.0
|
O
|
C:HOH489
|
3.1
|
32.1
|
1.0
|
N
|
C:ARG20
|
3.2
|
25.2
|
1.0
|
N
|
C:HIS21
|
3.5
|
25.5
|
1.0
|
CD2
|
C:HIS21
|
3.7
|
32.2
|
1.0
|
CG1
|
C:ILE206
|
4.0
|
26.8
|
1.0
|
CA
|
C:ARG20
|
4.0
|
18.5
|
1.0
|
CD1
|
C:ILE206
|
4.1
|
20.3
|
1.0
|
CA
|
C:CYS19
|
4.1
|
22.5
|
1.0
|
CB
|
C:HIS21
|
4.1
|
27.4
|
1.0
|
C
|
C:CYS19
|
4.1
|
25.0
|
1.0
|
CB
|
C:ARG20
|
4.1
|
25.1
|
1.0
|
C
|
C:ARG20
|
4.1
|
22.2
|
1.0
|
CG
|
C:HIS21
|
4.2
|
30.0
|
1.0
|
SG
|
C:CYS19
|
4.3
|
23.9
|
1.0
|
CA
|
C:HIS21
|
4.3
|
25.0
|
1.0
|
O
|
C:HIS21
|
4.4
|
25.7
|
1.0
|
NE2
|
C:GLN204
|
4.4
|
52.6
|
1.0
|
CB
|
C:CYS19
|
4.7
|
24.7
|
1.0
|
O
|
C:SER18
|
4.8
|
22.2
|
1.0
|
CD
|
C:ARG20
|
4.8
|
22.7
|
1.0
|
C
|
C:HIS21
|
4.8
|
25.4
|
1.0
|
NE2
|
C:HIS21
|
4.9
|
33.2
|
1.0
|
CG
|
C:GLN204
|
4.9
|
41.8
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 6wt2
Go back to
Chlorine Binding Sites List in 6wt2
Chlorine binding site 4 out
of 4 in the Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl303
b:32.9
occ:1.00
|
O
|
D:HOH420
|
2.9
|
29.1
|
1.0
|
N
|
D:ARG20
|
3.2
|
23.2
|
1.0
|
O
|
D:HOH430
|
3.4
|
27.8
|
1.0
|
N
|
D:HIS21
|
3.6
|
26.1
|
1.0
|
CD2
|
D:HIS21
|
3.9
|
36.5
|
1.0
|
CG1
|
D:ILE206
|
3.9
|
30.9
|
1.0
|
CD1
|
D:ILE206
|
3.9
|
34.1
|
1.0
|
CA
|
D:ARG20
|
4.0
|
23.3
|
1.0
|
CB
|
D:ARG20
|
4.1
|
25.7
|
1.0
|
CA
|
D:CYS19
|
4.1
|
22.8
|
1.0
|
C
|
D:CYS19
|
4.1
|
22.7
|
1.0
|
CB
|
D:HIS21
|
4.2
|
29.1
|
1.0
|
C
|
D:ARG20
|
4.3
|
25.6
|
1.0
|
SG
|
D:CYS19
|
4.4
|
26.2
|
1.0
|
CG
|
D:HIS21
|
4.4
|
34.2
|
1.0
|
CA
|
D:HIS21
|
4.5
|
25.3
|
1.0
|
O
|
D:HIS21
|
4.6
|
26.5
|
1.0
|
NE2
|
D:GLN204
|
4.6
|
47.7
|
1.0
|
O
|
D:SER18
|
4.7
|
24.4
|
1.0
|
CD
|
D:ARG20
|
4.7
|
27.2
|
1.0
|
CB
|
D:CYS19
|
4.8
|
26.2
|
1.0
|
O
|
D:HOH452
|
4.9
|
29.9
|
1.0
|
C
|
D:HIS21
|
5.0
|
25.4
|
1.0
|
|
Reference:
Y.Kim,
N.Maltseva,
M.Endres,
T.Crofts,
A.Joachimiak.
Crystal Structure of Putative Nad(P)H-Flavin Oxidoreductase From Neisseria Meningitidis To Be Published.
Page generated: Mon Jul 29 16:53:29 2024
|