Chlorine in PDB 6x6o: Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing

The structure of Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing, PDB code: 6x6o was solved by K.Shi, F.Kurniawan, S.Banerjee, N.H.Moeller, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.10 / 1.52
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	44.424, 79.822, 93.227, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 19.1

The binding sites of Chlorine atom in the Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing (pdb code 6x6o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing, PDB code: 6x6o:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:88.5 occ:1.00 O A:HOH346 3.5 50.5 1.0 HB2 A:ALA92 3.8 57.0 1.0 HG22 A:ILE91 3.8 58.7 1.0 HA A:ALA92 4.1 54.1 1.0 HB A:ILE91 4.3 44.5 1.0 HG21 A:ILE91 4.3 58.7 1.0 HG3 A:MET59 4.3 55.3 1.0 HE2 A:MET59 4.3 86.9 1.0 O A:HOH329 4.4 41.7 1.0 HG21 A:VAL95 4.5 80.2 1.0 CG2 A:ILE91 4.5 48.9 1.0 HE A:ARG56 4.5 99.8 1.0 HG2 A:ARG56 4.5 61.1 1.0 N A:ALA92 4.6 38.6 1.0 H A:ALA92 4.6 46.4 1.0 CB A:ALA92 4.6 47.5 1.0 CA A:ALA92 4.7 45.1 1.0 HH21 A:ARG56 4.8 0.4 1.0 CB A:ILE91 4.9 37.1 1.0 HB1 A:ALA92 5.0 57.0 1.0 HG22 A:VAL95 5.0 80.2 1.0 C A:ILE91 5.0 35.9 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:76.6 occ:1.00 HZ3 A:LYS26 2.7 0.5 1.0 HD3 A:LYS26 3.2 64.4 1.0 O A:HOH341 3.5 43.7 1.0 NZ A:LYS26 3.6 0.0 1.0 HD2 A:LYS26 3.8 64.4 1.0 CD A:LYS26 3.9 53.7 1.0 HZ2 A:LYS26 3.9 0.5 1.0 HZ1 A:LYS26 4.0 0.5 1.0 CE A:LYS26 4.4 78.2 1.0 HB3 A:LYS26 4.7 31.8 1.0 HE2 A:LYS26 4.9 93.9 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:99.0 occ:0.50 HB3 A:TYR24 3.4 32.1 1.0 HB2 A:LYS83 3.5 51.1 1.0 O A:HOH321 3.6 57.5 1.0 HD2 A:TYR24 3.8 36.1 1.0 HB3 A:LYS83 3.9 51.1 1.0 O A:HOH311 4.1 30.2 1.0 CB A:LYS83 4.2 42.6 1.0 CB A:TYR24 4.3 26.8 1.0 HD2 A:LYS83 4.4 81.5 1.0 CD2 A:TYR24 4.5 30.1 1.0 HA A:LYS83 4.6 37.1 1.0 O A:TYR24 4.6 26.1 1.0 HB2 A:TYR24 4.6 32.1 1.0 HD3 A:LYS83 4.8 81.5 1.0 CG A:TYR24 4.8 23.2 1.0 H A:TYR24 4.9 30.3 1.0 CD A:LYS83 5.0 67.9 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of T4 Protein Spackle As Determined By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:78.3 occ:1.00 HZ2 B:LYS60 2.3 92.6 1.0 HZ3 B:LYS53 2.5 80.9 1.0 HZ2 B:LYS53 3.0 80.9 1.0 NZ B:LYS60 3.1 77.1 1.0 NZ B:LYS53 3.1 67.4 1.0 O B:HOH363 3.1 48.2 1.0 O B:HOH361 3.3 37.6 1.0 HZ1 B:LYS60 3.4 92.6 1.0 HZ3 B:LYS60 3.5 92.6 1.0 HD2 B:LYS53 3.5 59.2 1.0 HZ1 B:LYS53 3.6 80.9 1.0 HD2 B:LYS60 3.9 43.6 1.0 O B:HOH372 4.0 52.6 1.0 HE3 B:LYS60 4.1 68.9 1.0 CE B:LYS60 4.1 57.4 1.0 HG3 B:LYS53 4.2 44.3 1.0 CD B:LYS53 4.2 49.3 1.0 CE B:LYS53 4.2 66.8 1.0 CD B:LYS60 4.5 36.3 1.0 HE2 B:LYS53 4.6 80.1 1.0 CG B:LYS53 4.7 37.0 1.0 HB2 B:LYS53 4.8 36.9 1.0 O B:HOH360 4.8 35.6 1.0 HD3 B:LYS60 4.9 43.6 1.0 O B:HOH351 4.9 35.3 1.0 HE3 B:LYS53 5.0 80.1 1.0 HE2 B:LYS60 5.0 68.9 1.0 O B:HOH331 5.0 33.2 1.0

K.Shi, F.Kurniawan, S.Banerjee, N.H.Moeller, H.Aihara. Crystal Structure of Bacteriophage T4 Spackle As Determined By Native Sad Phasing. Acta Crystallogr D Struct V. 76 899 2020BIOL.
ISSN: ISSN 2059-7983
PubMed: 32876065
DOI: 10.1107/S2059798320010979