Chlorine in PDB 6x6u: WOR5 From Pyrococcus Furiosus, Taurine-Bound

Protein crystallography data

The structure of WOR5 From Pyrococcus Furiosus, Taurine-Bound, PDB code: 6x6u was solved by W.N.Lanzilotta, L.G.Mathew, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.16 / 1.94
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 125.148, 127.501, 140.712, 90, 90, 90
R / Rfree (%) 17 / 19.6

Other elements in 6x6u:

The structure of WOR5 From Pyrococcus Furiosus, Taurine-Bound also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms
Tungsten (W) 2 atoms
Iron (Fe) 40 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the WOR5 From Pyrococcus Furiosus, Taurine-Bound (pdb code 6x6u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the WOR5 From Pyrococcus Furiosus, Taurine-Bound, PDB code: 6x6u:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6x6u

Go back to Chlorine Binding Sites List in 6x6u
Chlorine binding site 1 out of 3 in the WOR5 From Pyrococcus Furiosus, Taurine-Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of WOR5 From Pyrococcus Furiosus, Taurine-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:39.6
occ:1.00
O B:ASP172 3.8 40.5 1.0
NZ A:LYS148 3.9 25.4 1.0
CG B:PHE169 3.9 23.8 1.0
CD1 B:PHE169 4.0 23.8 1.0
CB B:PHE169 4.2 22.2 1.0
CD1 B:PHE173 4.2 27.2 1.0
CG2 A:ILE144 4.3 23.3 1.0
CD2 B:PHE169 4.4 22.3 1.0
C B:ASP172 4.4 37.5 1.0
CE A:LYS148 4.4 28.7 1.0
CE1 B:PHE169 4.5 20.9 1.0
CA B:PHE173 4.5 34.7 1.0
OH A:TYR311 4.7 29.1 1.0
N B:PHE173 4.8 32.9 1.0
CZ B:PHE49 4.8 24.4 1.0
O B:HOH314 4.8 40.6 1.0
CE2 B:PHE169 4.8 23.4 1.0
CZ B:PHE169 4.9 19.1 1.0
CE1 B:PHE173 5.0 27.2 1.0
CB B:PHE173 5.0 30.0 1.0

Chlorine binding site 2 out of 3 in 6x6u

Go back to Chlorine Binding Sites List in 6x6u
Chlorine binding site 2 out of 3 in the WOR5 From Pyrococcus Furiosus, Taurine-Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of WOR5 From Pyrococcus Furiosus, Taurine-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl705

b:39.8
occ:1.00
O C:HOH932 2.9 36.6 1.0
NE2 C:HIS126 3.0 30.5 1.0
NH2 D:ARG107 3.4 24.2 1.0
OG C:SER219 3.7 33.1 1.0
CB C:SER219 3.7 25.9 1.0
CG C:PRO168 3.9 32.0 1.0
CE1 C:HIS126 3.9 34.1 1.0
CD2 C:HIS126 3.9 30.1 1.0
CG C:GLU162 3.9 38.6 1.0
CB C:PRO168 4.0 23.5 1.0
ND2 C:ASN127 4.0 31.7 1.0
CE C:LYS217 4.3 30.1 1.0
CD C:GLU162 4.4 51.8 1.0
CG C:LYS217 4.4 24.4 1.0
CG2 C:ILE158 4.5 30.3 1.0
CZ D:ARG107 4.5 27.2 1.0
OE2 C:GLU162 4.6 51.7 1.0
NH1 D:ARG107 4.7 23.5 1.0
CB C:GLU162 4.9 35.2 1.0
CA C:SER219 5.0 25.0 1.0

Chlorine binding site 3 out of 3 in 6x6u

Go back to Chlorine Binding Sites List in 6x6u
Chlorine binding site 3 out of 3 in the WOR5 From Pyrococcus Furiosus, Taurine-Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of WOR5 From Pyrococcus Furiosus, Taurine-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl205

b:39.8
occ:1.00
NZ C:LYS148 3.7 28.0 1.0
O D:ASP172 3.7 41.2 1.0
CG D:PHE169 4.0 22.7 1.0
CD1 D:PHE169 4.1 24.2 1.0
CD1 D:PHE173 4.2 28.0 1.0
CB D:PHE169 4.2 22.6 1.0
CG2 C:ILE144 4.3 20.6 1.0
CE C:LYS148 4.4 29.6 1.0
CD2 D:PHE169 4.4 25.0 1.0
C D:ASP172 4.4 37.1 1.0
CA D:PHE173 4.5 34.8 1.0
CE1 D:PHE169 4.5 21.5 1.0
OH C:TYR311 4.7 25.8 1.0
CZ D:PHE49 4.7 21.0 1.0
N D:PHE173 4.8 33.8 1.0
CE1 D:PHE173 4.8 25.0 1.0
CE2 D:PHE169 4.9 22.9 1.0
CB D:ASP172 4.9 36.0 1.0
CZ D:PHE169 4.9 18.6 1.0

Reference:

W.N.Lanzilotta, L.G.Mathew. A Novel Function For WOR5 Revealed Through in Situ Crystallography and Biochemical Analysis To Be Published.
Page generated: Fri Dec 17 08:47:06 2021

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