Chlorine in PDB 6x9f: Pseudomonas Aeruginosa Murc with AZ8074
Enzymatic activity of Pseudomonas Aeruginosa Murc with AZ8074
All present enzymatic activity of Pseudomonas Aeruginosa Murc with AZ8074:
6.3.2.8;
Protein crystallography data
The structure of Pseudomonas Aeruginosa Murc with AZ8074, PDB code: 6x9f
was solved by
P.S.Horanyi,
S.J.Mayclin,
T.F.Durand-Reville,
D.D.Lorimer,
T.E.Edwards,
Seattle Structural Genomics Center For Infectious Disease (Ssgcid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.67 /
2.35
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
284.690,
109.050,
108.200,
90.00,
112.26,
90.00
|
R / Rfree (%)
|
18.3 /
21.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Pseudomonas Aeruginosa Murc with AZ8074
(pdb code 6x9f). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Pseudomonas Aeruginosa Murc with AZ8074, PDB code: 6x9f:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 6x9f
Go back to
Chlorine Binding Sites List in 6x9f
Chlorine binding site 1 out
of 5 in the Pseudomonas Aeruginosa Murc with AZ8074
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Pseudomonas Aeruginosa Murc with AZ8074 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl508
b:97.3
occ:1.00
|
N
|
D:VAL94
|
3.5
|
46.7
|
1.0
|
O
|
D:VAL94
|
3.7
|
46.0
|
1.0
|
CD2
|
D:LEU88
|
4.0
|
58.8
|
1.0
|
CA
|
C:ALA233
|
4.1
|
41.1
|
1.0
|
CB
|
D:VAL94
|
4.1
|
45.6
|
1.0
|
O
|
C:ILE232
|
4.2
|
57.6
|
1.0
|
CA
|
D:PRO93
|
4.2
|
46.1
|
1.0
|
CA
|
D:VAL94
|
4.2
|
42.1
|
1.0
|
CB
|
C:ALA233
|
4.2
|
38.6
|
1.0
|
C
|
D:PRO93
|
4.3
|
48.7
|
1.0
|
C
|
D:VAL94
|
4.4
|
44.7
|
1.0
|
CG2
|
D:VAL94
|
4.5
|
44.0
|
1.0
|
O
|
D:HOH618
|
4.6
|
62.5
|
1.0
|
O
|
C:PRO230
|
4.6
|
51.0
|
1.0
|
C
|
C:ILE232
|
4.8
|
47.5
|
1.0
|
N
|
C:ALA233
|
4.8
|
42.9
|
1.0
|
O
|
D:ILE92
|
4.9
|
54.0
|
1.0
|
CB
|
D:PRO93
|
5.0
|
45.3
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 6x9f
Go back to
Chlorine Binding Sites List in 6x9f
Chlorine binding site 2 out
of 5 in the Pseudomonas Aeruginosa Murc with AZ8074
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Pseudomonas Aeruginosa Murc with AZ8074 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl508
b:0.0
occ:1.00
|
N
|
E:VAL94
|
3.4
|
35.3
|
1.0
|
O
|
E:VAL94
|
3.7
|
43.7
|
1.0
|
CB
|
B:ALA233
|
4.0
|
34.1
|
1.0
|
CA
|
E:PRO93
|
4.1
|
44.1
|
1.0
|
CA
|
B:ALA233
|
4.1
|
40.0
|
1.0
|
CA
|
E:VAL94
|
4.2
|
39.3
|
1.0
|
CB
|
E:VAL94
|
4.2
|
39.1
|
1.0
|
C
|
E:PRO93
|
4.3
|
36.9
|
1.0
|
CD2
|
E:LEU88
|
4.3
|
48.8
|
1.0
|
C
|
E:VAL94
|
4.4
|
44.7
|
1.0
|
O
|
B:ILE232
|
4.4
|
54.7
|
1.0
|
CG2
|
E:VAL94
|
4.6
|
36.2
|
1.0
|
O
|
B:PRO230
|
4.8
|
47.0
|
1.0
|
CD1
|
E:ILE77
|
4.8
|
67.4
|
1.0
|
CB
|
E:PRO93
|
4.8
|
42.6
|
1.0
|
O
|
E:ILE92
|
4.8
|
50.6
|
1.0
|
N
|
B:ALA233
|
4.9
|
36.8
|
1.0
|
C
|
B:ILE232
|
4.9
|
46.4
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 6x9f
Go back to
Chlorine Binding Sites List in 6x9f
Chlorine binding site 3 out
of 5 in the Pseudomonas Aeruginosa Murc with AZ8074
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Pseudomonas Aeruginosa Murc with AZ8074 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl506
b:98.4
occ:1.00
|
N
|
F:VAL94
|
3.1
|
45.4
|
1.0
|
O
|
F:HOH641
|
3.3
|
61.9
|
1.0
|
O
|
F:VAL94
|
3.3
|
47.5
|
1.0
|
CB
|
H:ALA233
|
3.8
|
33.7
|
1.0
|
CA
|
F:PRO93
|
3.9
|
40.0
|
1.0
|
CA
|
F:VAL94
|
3.9
|
44.3
|
1.0
|
CA
|
H:ALA233
|
4.0
|
39.8
|
1.0
|
C
|
F:VAL94
|
4.0
|
45.7
|
1.0
|
C
|
F:PRO93
|
4.0
|
45.9
|
1.0
|
CB
|
F:VAL94
|
4.0
|
44.9
|
1.0
|
CD2
|
F:LEU88
|
4.3
|
52.9
|
1.0
|
O
|
H:ILE232
|
4.4
|
43.7
|
1.0
|
O
|
F:ILE92
|
4.6
|
55.7
|
1.0
|
CB
|
F:PRO93
|
4.7
|
37.6
|
1.0
|
CG2
|
F:VAL94
|
4.7
|
39.6
|
1.0
|
N
|
H:ALA233
|
4.8
|
38.2
|
1.0
|
C
|
H:ILE232
|
4.9
|
42.2
|
1.0
|
O
|
H:PRO230
|
5.0
|
51.3
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 6x9f
Go back to
Chlorine Binding Sites List in 6x9f
Chlorine binding site 4 out
of 5 in the Pseudomonas Aeruginosa Murc with AZ8074
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Pseudomonas Aeruginosa Murc with AZ8074 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl505
b:85.6
occ:1.00
|
N
|
G:VAL94
|
3.5
|
54.3
|
1.0
|
O
|
G:VAL94
|
3.7
|
59.6
|
1.0
|
CA
|
A:ALA233
|
4.1
|
44.6
|
1.0
|
CB
|
A:ALA233
|
4.1
|
40.5
|
1.0
|
CD2
|
G:LEU88
|
4.1
|
57.6
|
1.0
|
CB
|
G:VAL94
|
4.1
|
47.7
|
1.0
|
CA
|
G:VAL94
|
4.2
|
48.2
|
1.0
|
O
|
A:ILE232
|
4.2
|
61.5
|
1.0
|
CA
|
G:PRO93
|
4.3
|
48.6
|
1.0
|
C
|
G:VAL94
|
4.4
|
54.0
|
1.0
|
C
|
G:PRO93
|
4.4
|
51.2
|
1.0
|
O
|
A:PRO230
|
4.7
|
51.4
|
1.0
|
CG2
|
G:VAL94
|
4.7
|
44.6
|
1.0
|
N
|
A:ALA233
|
4.8
|
44.0
|
1.0
|
C
|
A:ILE232
|
4.8
|
50.6
|
1.0
|
CB
|
G:PRO93
|
5.0
|
45.3
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 6x9f
Go back to
Chlorine Binding Sites List in 6x9f
Chlorine binding site 5 out
of 5 in the Pseudomonas Aeruginosa Murc with AZ8074
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Pseudomonas Aeruginosa Murc with AZ8074 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl506
b:0.8
occ:1.00
|
N
|
H:VAL94
|
3.4
|
46.0
|
1.0
|
O
|
H:HOH628
|
3.4
|
60.4
|
1.0
|
O
|
H:VAL94
|
3.6
|
48.5
|
1.0
|
CB
|
F:ALA233
|
3.9
|
38.0
|
1.0
|
O
|
H:HOH601
|
4.0
|
57.1
|
1.0
|
CA
|
F:ALA233
|
4.0
|
42.2
|
1.0
|
CA
|
H:VAL94
|
4.2
|
44.9
|
1.0
|
CB
|
H:VAL94
|
4.2
|
41.4
|
1.0
|
CA
|
H:PRO93
|
4.2
|
46.5
|
1.0
|
C
|
H:VAL94
|
4.3
|
50.7
|
1.0
|
CD2
|
H:LEU88
|
4.3
|
47.0
|
1.0
|
C
|
H:PRO93
|
4.3
|
48.8
|
1.0
|
O
|
F:ILE232
|
4.4
|
55.2
|
1.0
|
O
|
F:HOH634
|
4.4
|
63.8
|
1.0
|
CG2
|
H:VAL94
|
4.8
|
41.5
|
1.0
|
O
|
F:PRO230
|
4.8
|
53.5
|
1.0
|
N
|
F:ALA233
|
4.8
|
39.8
|
1.0
|
C
|
F:ILE232
|
4.9
|
48.6
|
1.0
|
O
|
H:ILE92
|
4.9
|
52.9
|
1.0
|
CB
|
H:PRO93
|
5.0
|
43.5
|
1.0
|
|
Reference:
P.S.Horanyi,
S.J.Mayclin,
T.F.Durand-Reville,
D.D.Lorimer,
T.E.Edwards.
Pseudomonas Aeruginosa Murc with AZ8074 To Be Published.
Page generated: Mon Jul 29 17:07:01 2024
|