Chlorine in PDB 6xd0: Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434

The structure of Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434, PDB code: 6xd0 was solved by R.Arora, T.E.Benson, C.W.Liew, J.Lescar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.01
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	161.660, 176.240, 57.760, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 19.4

The structure of Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Chlorine atom in the Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434 (pdb code 6xd0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434, PDB code: 6xd0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1008 b:69.8 occ:1.00 CL1 A:V0M1008 0.0 69.8 1.0 C19 A:V0M1008 1.7 68.0 1.0 C18 A:V0M1008 2.7 67.3 1.0 C14 A:V0M1008 2.8 67.0 1.0 N2 A:V0M1008 3.0 65.8 1.0 C13 A:V0M1008 3.2 65.1 1.0 C20 A:V0M1008 3.3 64.9 1.0 CG A:ARG481 3.6 52.3 1.0 CB A:ARG481 3.9 45.5 1.0 O A:ARG481 4.0 41.0 1.0 C17 A:V0M1008 4.0 66.9 1.0 C15 A:V0M1008 4.1 67.0 1.0 C12 A:V0M1008 4.2 64.6 1.0 CE1 A:PHE398 4.2 44.5 1.0 C21 A:V0M1008 4.2 64.7 1.0 C A:ARG481 4.4 40.9 1.0 CB A:PHE485 4.5 35.7 1.0 CA A:ARG481 4.5 42.1 1.0 C16 A:V0M1008 4.5 66.8 1.0 CB A:VAL603 4.6 70.7 1.0 CD A:ARG481 4.7 58.3 1.0 CG2 A:VAL603 4.7 71.3 1.0 C11 A:V0M1008 5.0 63.9 1.0 C23 A:V0M1008 5.0 64.6 1.0 C22 A:V0M1008 5.0 64.7 1.0 CD1 A:PHE398 5.0 44.0 1.0

Chlorine binding site 2 out of 2 in the Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1008 b:67.2 occ:1.00 CL2 A:V0M1008 0.0 67.2 1.0 C15 A:V0M1008 1.7 67.0 1.0 C16 A:V0M1008 2.7 66.8 1.0 C14 A:V0M1008 2.8 67.0 1.0 N2 A:V0M1008 3.1 65.8 1.0 O1 A:V0M1008 3.4 63.0 1.0 ND2 A:ASN492 3.5 50.8 1.0 CB A:ASN492 3.6 41.5 1.0 CG1 A:VAL603 3.7 71.3 1.0 CG A:ASN492 3.8 49.0 1.0 OE2 A:GLU493 3.8 49.7 1.0 CD1 A:PHE485 3.9 38.1 1.0 C17 A:V0M1008 4.0 66.9 1.0 O A:HOH1320 4.0 51.4 1.0 C19 A:V0M1008 4.1 68.0 1.0 CE1 A:PHE485 4.2 39.0 1.0 C13 A:V0M1008 4.3 65.1 1.0 CA A:GLY489 4.4 34.8 1.0 C10 A:V0M1008 4.4 63.4 1.0 O A:GLY489 4.5 35.3 1.0 C18 A:V0M1008 4.5 67.3 1.0 CB A:VAL603 4.6 70.7 1.0 CE A:LYS401 4.7 53.1 1.0 OD1 A:ASN492 4.7 51.8 1.0 NZ A:LYS401 4.7 53.8 1.0 CD A:GLU493 4.8 48.0 1.0 C2 A:V0M1008 4.9 63.8 1.0 CA A:ASN492 5.0 37.9 1.0 CG A:GLU493 5.0 41.1 1.0 C A:GLY489 5.0 35.0 1.0 C20 A:V0M1008 5.0 64.9 1.0

R.Arora, T.E.Benson, C.W.Liew, J.Lescar. Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Nitd-434 To Be Published.