Chlorine in PDB 6xj0: Crystal Structure of Multi-Copper Oxidase From Pediococcus Pentosaceus

The structure of Crystal Structure of Multi-Copper Oxidase From Pediococcus Pentosaceus, PDB code: 6xj0 was solved by I.Pardo, A.S.Soares, R.Collins, S.H.Partowmah, E.A.Coler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	110.31 / 2.34
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	127.37, 127.37, 75.27, 90, 90, 120
R / Rfree (%)	18.2 / 22.3

The structure of Crystal Structure of Multi-Copper Oxidase From Pediococcus Pentosaceus also contains other interesting chemical elements:

Copper

(Cu)

4 atoms

The binding sites of Chlorine atom in the Crystal Structure of Multi-Copper Oxidase From Pediococcus Pentosaceus (pdb code 6xj0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Multi-Copper Oxidase From Pediococcus Pentosaceus, PDB code: 6xj0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Multi-Copper Oxidase From Pediococcus Pentosaceus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Multi-Copper Oxidase From Pediococcus Pentosaceus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl604 b:29.1 occ:1.00 N A:TRP495 3.3 34.8 1.0 NH1 A:ARG487 3.5 44.6 1.0 O A:HOH915 3.7 71.0 1.0 CD A:ARG487 3.8 42.6 1.0 CA A:ILE494 3.9 39.7 1.0 O A:HOH1090 4.1 15.8 0.5 O A:TRP495 4.1 33.1 1.0 C A:ILE494 4.1 37.7 1.0 CB A:TRP495 4.2 30.0 1.0 O A:GLU493 4.2 41.7 1.0 CA A:TRP495 4.2 33.3 1.0 CZ A:ARG487 4.3 40.0 1.0 O A:HOH814 4.4 37.3 1.0 CD1 A:ILE494 4.4 49.7 1.0 NE A:ARG487 4.4 41.5 1.0 C A:TRP495 4.6 32.1 1.0 N A:ILE494 4.7 42.2 1.0 C A:GLU493 4.8 49.2 1.0 CB A:ILE494 4.9 41.0 1.0 CG2 A:VAL489 4.9 53.4 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Multi-Copper Oxidase From Pediococcus Pentosaceus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Multi-Copper Oxidase From Pediococcus Pentosaceus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl605 b:31.4 occ:1.00 O A:HOH1116 2.8 15.0 0.5 O A:HOH754 3.1 25.0 1.0 O A:HOH1123 3.3 48.3 1.0 O A:HOH1041 3.4 3.5 0.5 N A:PRO65 3.7 27.0 1.0 C A:LEU64 3.8 26.0 1.0 O A:LEU64 4.0 26.6 1.0 O A:HOH1116 4.0 9.7 0.5 CA A:PRO65 4.0 27.6 1.0 OE1 A:GLN62 4.0 31.3 1.0 CD A:PRO65 4.1 27.2 1.0 CG A:PRO65 4.2 28.0 1.0 O A:HOH846 4.3 30.3 0.5 CE A:LYS32 4.5 31.0 1.0 CA A:LEU64 4.5 25.3 1.0 O A:HOH1135 4.6 7.4 0.5 N A:LEU64 4.7 25.5 1.0 CB A:PRO65 4.7 26.9 1.0 O A:LEU63 4.7 23.2 1.0 O A:HOH928 4.7 31.5 1.0 C A:LEU63 4.8 24.1 1.0 CD A:GLN62 4.8 34.0 1.0 CG A:PRO30 4.8 32.0 1.0 CB A:GLN62 4.9 27.1 1.0

I.Olmeda, P.Casino, R.E.Collins, R.Sendra, S.Callejon, J.Huesa, A.S.Soares, S.Ferrer, I.Pardo. Structural Analysis and Biochemical Properties of Laccase Enzymes From Two Pediococcus Species. Microb Biotechnol 2021.
ISSN: ISSN 1751-7915
PubMed: 33635570
DOI: 10.1111/1751-7915.13751