Atomistry » Chlorine » PDB 6xi9-6xqy » 6xpb
Atomistry »
  Chlorine »
    PDB 6xi9-6xqy »
      6xpb »

Chlorine in PDB 6xpb: Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule

Enzymatic activity of Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule

All present enzymatic activity of Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule:
2.3.2.2; 3.4.19.13; 3.4.19.14;

Protein crystallography data

The structure of Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule, PDB code: 6xpb was solved by S.S.Terzyan, M.H.Hanigan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.37 / 1.74
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 106.362, 124.218, 104.232, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 18.9

Other elements in 6xpb:

The structure of Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule (pdb code 6xpb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule, PDB code: 6xpb:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6xpb

Go back to Chlorine Binding Sites List in 6xpb
Chlorine binding site 1 out of 2 in the Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:19.1
occ:1.00
 O B:HOH1268 3.1 16.1 1.0
NH2 B:ARG409 3.2 17.9 1.0
N A:LEU213 3.2 14.6 1.0
C A:LEU210 3.3 16.7 1.0
N A:GLN212 3.3 16.3 1.0
CA A:LEU210 3.4 16.3 1.0
N A:PRO211 3.6 17.6 1.0
CB A:GLN212 3.7 16.7 1.0
CB A:LEU210 3.8 16.7 1.0
O A:LEU210 3.8 15.7 1.0
CA A:GLN212 3.8 16.0 1.0
CD2 A:LEU210 3.9 17.2 1.0
CD A:PRO211 3.9 19.6 1.0
OE1 A:GLN212 3.9 23.8 1.0
CG1 A:VAL194 3.9 23.5 1.0
CB A:LEU213 3.9 15.7 0.5
C A:GLN212 4.0 15.0 1.0
CB A:LEU213 4.0 14.6 0.5
CG A:LEU213 4.1 13.8 0.5
CA B:GLY414 4.1 13.6 1.0
CZ B:ARG409 4.2 18.0 1.0
CA A:LEU213 4.2 14.9 0.5
CA A:LEU213 4.2 14.6 0.5
NE B:ARG409 4.2 17.8 1.0
C A:PRO211 4.3 17.0 1.0
CG A:LEU210 4.5 17.4 1.0
CA A:PRO211 4.5 18.6 1.0
CD1 A:LEU213 4.6 13.0 0.5
CD A:GLN212 4.6 22.5 1.0
O B:GLY414 4.7 14.4 1.0
CG A:GLN212 4.8 20.1 1.0
N A:LEU210 4.8 16.0 1.0
CG A:PRO211 4.9 21.4 1.0
CB A:VAL194 4.9 23.4 1.0
C B:GLY414 4.9 14.0 1.0

Chlorine binding site 2 out of 2 in 6xpb

Go back to Chlorine Binding Sites List in 6xpb
Chlorine binding site 2 out of 2 in the Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Human GGT1 in Complex with 2-Amino-4-(((1- ((Carboxymethyl)Amino)-1-Oxobutan-2-Yl)Oxy)(Phenoxy)Phosphoryl) Butanoic Acid (Acpb) Molecule within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl603

b:42.6
occ:1.00
 O A:HOH900 2.3 33.3 1.0
NE2 B:GLN545 2.9 17.6 1.0
N B:HIS383 3.0 13.3 1.0
OD2 A:ASP46 3.2 30.6 1.0
CA B:ALA382 3.4 13.6 1.0
CB A:ASP46 3.6 22.3 1.0
C B:ALA382 3.7 14.2 1.0
CG A:ASP46 3.8 27.1 1.0
O B:HIS383 3.8 14.5 1.0
CG1 B:VAL543 3.9 14.6 1.0
O B:THR381 3.9 14.7 1.0
CA B:HIS383 4.0 13.0 1.0
O A:HOH784 4.0 23.1 1.0
CB B:ALA472 4.0 13.2 1.0
CB B:ALA382 4.2 14.6 1.0
CD B:GLN545 4.2 17.4 1.0
CB B:VAL543 4.3 14.1 1.0
CB B:HIS383 4.3 12.7 1.0
C B:HIS383 4.4 13.7 1.0
N B:ALA382 4.5 13.1 1.0
O B:HOH1343 4.6 43.1 1.0
C B:THR381 4.6 13.6 1.0
O B:VAL543 4.6 14.6 1.0
O A:HOH718 4.6 25.6 1.0
OE1 B:GLN545 4.7 18.2 1.0
CA A:ASP46 4.9 19.4 1.0
O B:ALA382 4.9 13.0 1.0
N B:ALA472 4.9 12.5 1.0
OD1 A:ASP46 4.9 28.2 1.0

Reference:

S.S.Terzyan, L.T.Nguyen, A.W.G.Burgett, A.Heroux, C.A.Smith, Y.You, M.H.Hanigan. Crystal Structures of Glutathione- and Inhibitor-Bound Human GGT1: Critical Interactions Within the Cysteinylglycine Binding Site. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 33187988
DOI: 10.1074/JBC.RA120.016265
Page generated: Mon Jul 29 17:18:14 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy