Chlorine in PDB 6xvt: Enah EVH1 in Complex with Ac-[2-Cl-F]-Ppppteddl-NH2
Protein crystallography data
The structure of Enah EVH1 in Complex with Ac-[2-Cl-F]-Ppppteddl-NH2, PDB code: 6xvt
was solved by
M.Barone,
K.Le Cong,
Y.Roske,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.60 /
1.40
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
34.650,
44.280,
43.160,
60.85,
84.04,
84.01
|
R / Rfree (%)
|
20.2 /
23.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Enah EVH1 in Complex with Ac-[2-Cl-F]-Ppppteddl-NH2
(pdb code 6xvt). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Enah EVH1 in Complex with Ac-[2-Cl-F]-Ppppteddl-NH2, PDB code: 6xvt:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 6xvt
Go back to
Chlorine Binding Sites List in 6xvt
Chlorine binding site 1 out
of 2 in the Enah EVH1 in Complex with Ac-[2-Cl-F]-Ppppteddl-NH2
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Enah EVH1 in Complex with Ac-[2-Cl-F]-Ppppteddl-NH2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl2
b:19.2
occ:1.00
|
CL
|
G:2L52
|
0.0
|
19.2
|
1.0
|
C15
|
G:2L52
|
1.7
|
13.7
|
1.0
|
C19
|
G:2L52
|
2.6
|
14.2
|
1.0
|
H6
|
G:2L52
|
2.7
|
18.2
|
1.0
|
C14
|
G:2L52
|
2.7
|
15.9
|
1.0
|
H1
|
G:2L52
|
2.8
|
17.1
|
1.0
|
HG2
|
A:ARG81
|
2.9
|
44.3
|
1.0
|
H7
|
G:2L52
|
2.9
|
19.3
|
1.0
|
HG3
|
A:GLN79
|
3.0
|
21.6
|
1.0
|
HG3
|
A:ARG81
|
3.0
|
44.3
|
1.0
|
C13
|
G:2L52
|
3.1
|
15.2
|
1.0
|
HG13
|
A:VAL86
|
3.1
|
20.3
|
1.0
|
CG
|
A:ARG81
|
3.3
|
36.9
|
1.0
|
HD2
|
G:PRO3
|
3.4
|
24.5
|
1.0
|
HB2
|
A:GLN79
|
3.5
|
19.7
|
1.0
|
HG11
|
A:VAL86
|
3.5
|
20.3
|
1.0
|
C12
|
G:2L52
|
3.5
|
16.1
|
1.0
|
HD3
|
A:ARG81
|
3.5
|
54.0
|
1.0
|
HA
|
A:TRP80
|
3.6
|
13.9
|
1.0
|
HE21
|
A:GLN79
|
3.6
|
27.9
|
1.0
|
HD3
|
G:PRO3
|
3.6
|
24.5
|
1.0
|
CG
|
A:GLN79
|
3.7
|
18.0
|
1.0
|
CG1
|
A:VAL86
|
3.7
|
16.9
|
1.0
|
NE2
|
A:GLN79
|
3.8
|
23.2
|
1.0
|
CD
|
A:GLN79
|
3.8
|
18.8
|
1.0
|
CD
|
G:PRO3
|
3.9
|
20.4
|
1.0
|
C18
|
G:2L52
|
3.9
|
18.8
|
1.0
|
C
|
A:TRP80
|
4.0
|
16.3
|
1.0
|
CD
|
A:ARG81
|
4.0
|
45.0
|
1.0
|
C16
|
G:2L52
|
4.0
|
15.8
|
1.0
|
O
|
G:ACY1
|
4.0
|
29.2
|
1.0
|
CA
|
A:TRP80
|
4.1
|
11.6
|
1.0
|
O
|
A:TRP80
|
4.1
|
13.6
|
1.0
|
N
|
A:TRP80
|
4.1
|
12.2
|
1.0
|
CB
|
A:GLN79
|
4.1
|
16.4
|
1.0
|
HG12
|
A:VAL86
|
4.1
|
20.3
|
1.0
|
H5
|
G:2L52
|
4.1
|
18.2
|
1.0
|
HE22
|
A:GLN79
|
4.2
|
27.9
|
1.0
|
C
|
A:GLN79
|
4.3
|
12.0
|
1.0
|
H
|
A:TRP80
|
4.3
|
14.6
|
1.0
|
HB3
|
A:ASN71
|
4.4
|
20.1
|
1.0
|
HH11
|
A:ARG81
|
4.4
|
34.1
|
1.0
|
N
|
G:PRO3
|
4.4
|
19.9
|
1.0
|
N
|
A:ARG81
|
4.5
|
14.0
|
1.0
|
C11
|
G:2L52
|
4.5
|
20.0
|
1.0
|
C17
|
G:2L52
|
4.5
|
15.9
|
1.0
|
HG2
|
A:GLN79
|
4.5
|
21.6
|
1.0
|
OE1
|
A:GLN79
|
4.5
|
23.6
|
1.0
|
N4
|
G:2L52
|
4.6
|
20.9
|
1.0
|
O
|
A:GLN79
|
4.6
|
13.3
|
1.0
|
HD2
|
A:ARG81
|
4.6
|
54.0
|
1.0
|
CB
|
A:ARG81
|
4.7
|
23.8
|
1.0
|
C
|
G:ACY1
|
4.7
|
26.1
|
1.0
|
HB2
|
A:ASN71
|
4.8
|
20.1
|
1.0
|
H
|
A:ARG81
|
4.8
|
16.8
|
1.0
|
HG22
|
A:VAL86
|
4.8
|
16.3
|
1.0
|
H2
|
G:2L52
|
4.8
|
22.6
|
1.0
|
HB3
|
A:GLN79
|
4.8
|
19.7
|
1.0
|
CA
|
A:GLN79
|
4.9
|
13.2
|
1.0
|
H4
|
G:2L52
|
4.9
|
19.0
|
1.0
|
HD22
|
A:ASN71
|
4.9
|
27.5
|
1.0
|
HG21
|
A:VAL86
|
5.0
|
16.3
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 6xvt
Go back to
Chlorine Binding Sites List in 6xvt
Chlorine binding site 2 out
of 2 in the Enah EVH1 in Complex with Ac-[2-Cl-F]-Ppppteddl-NH2
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Enah EVH1 in Complex with Ac-[2-Cl-F]-Ppppteddl-NH2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl2
b:20.2
occ:1.00
|
CL
|
H:2L52
|
0.0
|
20.2
|
1.0
|
C15
|
H:2L52
|
1.7
|
14.1
|
1.0
|
C19
|
H:2L52
|
2.7
|
17.2
|
1.0
|
H6
|
H:2L52
|
2.7
|
19.8
|
1.0
|
C14
|
H:2L52
|
2.7
|
14.9
|
1.0
|
H1
|
H:2L52
|
2.8
|
20.7
|
1.0
|
H7
|
H:2L52
|
2.9
|
23.4
|
1.0
|
HG2
|
B:ARG81
|
3.0
|
41.7
|
1.0
|
HG3
|
B:ARG81
|
3.0
|
41.7
|
1.0
|
C13
|
H:2L52
|
3.0
|
16.5
|
1.0
|
HG13
|
B:VAL86
|
3.1
|
24.7
|
1.0
|
HG3
|
B:GLN79
|
3.1
|
22.2
|
1.0
|
HG11
|
B:VAL86
|
3.3
|
24.7
|
1.0
|
CG
|
B:ARG81
|
3.4
|
34.8
|
1.0
|
C12
|
H:2L52
|
3.5
|
19.5
|
1.0
|
HD3
|
H:PRO3
|
3.5
|
28.5
|
1.0
|
HA
|
B:TRP80
|
3.5
|
18.2
|
1.0
|
HB2
|
B:GLN79
|
3.6
|
18.7
|
1.0
|
HD2
|
H:PRO3
|
3.6
|
28.5
|
1.0
|
HD3
|
B:ARG81
|
3.6
|
57.5
|
1.0
|
CG1
|
B:VAL86
|
3.6
|
20.6
|
1.0
|
HE21
|
B:GLN79
|
3.8
|
28.0
|
1.0
|
CG
|
B:GLN79
|
3.8
|
18.5
|
1.0
|
C
|
B:TRP80
|
3.9
|
16.4
|
1.0
|
NE2
|
B:GLN79
|
3.9
|
23.3
|
1.0
|
C18
|
H:2L52
|
4.0
|
16.3
|
1.0
|
CD
|
B:GLN79
|
4.0
|
18.4
|
1.0
|
CD
|
H:PRO3
|
4.0
|
23.7
|
1.0
|
C16
|
H:2L52
|
4.0
|
17.6
|
1.0
|
CA
|
B:TRP80
|
4.0
|
15.1
|
1.0
|
O
|
H:ACY1
|
4.0
|
24.2
|
1.0
|
O
|
B:TRP80
|
4.0
|
16.1
|
1.0
|
N
|
B:TRP80
|
4.0
|
14.8
|
1.0
|
CD
|
B:ARG81
|
4.1
|
47.9
|
1.0
|
H5
|
H:2L52
|
4.1
|
19.8
|
1.0
|
HG12
|
B:VAL86
|
4.2
|
24.7
|
1.0
|
CB
|
B:GLN79
|
4.2
|
15.6
|
1.0
|
HH11
|
B:ARG81
|
4.2
|
32.4
|
1.0
|
C
|
B:GLN79
|
4.3
|
14.6
|
1.0
|
H
|
B:TRP80
|
4.3
|
17.7
|
1.0
|
HE22
|
B:GLN79
|
4.4
|
28.0
|
1.0
|
C11
|
H:2L52
|
4.4
|
21.3
|
1.0
|
N
|
B:ARG81
|
4.4
|
17.0
|
1.0
|
HG22
|
B:VAL86
|
4.5
|
22.1
|
1.0
|
C17
|
H:2L52
|
4.5
|
17.0
|
1.0
|
N
|
H:PRO3
|
4.5
|
20.8
|
1.0
|
HB3
|
B:ASN71
|
4.5
|
22.6
|
1.0
|
N4
|
H:2L52
|
4.5
|
20.4
|
1.0
|
O
|
B:GLN79
|
4.5
|
16.4
|
1.0
|
OE1
|
B:GLN79
|
4.6
|
24.6
|
1.0
|
HG2
|
B:GLN79
|
4.6
|
22.2
|
1.0
|
C
|
H:ACY1
|
4.7
|
25.5
|
1.0
|
HG21
|
B:VAL86
|
4.7
|
22.1
|
1.0
|
CB
|
B:ARG81
|
4.7
|
23.6
|
1.0
|
HD2
|
B:ARG81
|
4.7
|
57.5
|
1.0
|
H
|
B:ARG81
|
4.8
|
20.4
|
1.0
|
HB2
|
B:ASN71
|
4.8
|
22.6
|
1.0
|
CB
|
B:VAL86
|
4.8
|
16.5
|
1.0
|
H2
|
H:2L52
|
4.8
|
19.6
|
1.0
|
H4
|
H:2L52
|
4.8
|
21.1
|
1.0
|
CG2
|
B:VAL86
|
4.9
|
18.4
|
1.0
|
NH1
|
B:ARG81
|
4.9
|
27.0
|
1.0
|
CA
|
B:GLN79
|
4.9
|
14.1
|
1.0
|
HB3
|
B:GLN79
|
4.9
|
18.7
|
1.0
|
|
Reference:
M.Barone,
M.Muller,
R.Opitz,
Y.Roske,
A.Soicke,
S.Chiha,
S.Klein,
H.G.Schmalz,
R.Kuhne.
Structure-Guided Inhibitor Against Ena/Vasp Abrogates Breast Cancer Invasion To Be Published.
Page generated: Mon Jul 29 17:24:45 2024
|