Chlorine in PDB 6xvy: Human Myelin Protein P2 Mutant R88Q
Protein crystallography data
The structure of Human Myelin Protein P2 Mutant R88Q, PDB code: 6xvy
was solved by
S.Ruskamo,
M.Lehtimaki,
P.Kursula,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
40.00 /
1.80
|
|
Space group
|
P 41 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
64.880,
64.880,
264.350,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.9 /
19.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Human Myelin Protein P2 Mutant R88Q
(pdb code 6xvy). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Human Myelin Protein P2 Mutant R88Q, PDB code: 6xvy:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 6xvy
Go back to
Chlorine Binding Sites List in 6xvy
Chlorine binding site 1 out
of 4 in the Human Myelin Protein P2 Mutant R88Q
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Human Myelin Protein P2 Mutant R88Q within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl202
b:36.8
occ:1.00
|
H
|
B:LYS37
|
2.4
|
17.7
|
1.0
|
|
H
|
B:THR56
|
2.7
|
18.6
|
1.0
|
|
HB2
|
B:SER55
|
3.0
|
16.8
|
1.0
|
|
O
|
B:HOH409
|
3.2
|
17.5
|
1.0
|
|
HA
|
B:ALA36
|
3.2
|
16.7
|
1.0
|
|
N
|
B:LYS37
|
3.3
|
14.7
|
1.0
|
|
HA
|
B:SER55
|
3.4
|
23.4
|
1.0
|
|
N
|
B:THR56
|
3.5
|
15.6
|
1.0
|
|
OG1
|
B:THR56
|
3.6
|
18.7
|
1.0
|
|
HG1
|
B:THR56
|
3.7
|
22.5
|
1.0
|
|
O
|
B:LYS37
|
3.8
|
17.5
|
1.0
|
|
HB
|
B:THR56
|
3.8
|
20.4
|
1.0
|
|
HB2
|
B:LYS37
|
3.8
|
33.0
|
1.0
|
|
CB
|
B:SER55
|
3.9
|
14.0
|
1.0
|
|
HB1
|
B:ALA36
|
3.9
|
21.4
|
1.0
|
|
CA
|
B:ALA36
|
4.0
|
13.9
|
1.0
|
|
CA
|
B:SER55
|
4.0
|
19.5
|
1.0
|
|
C
|
B:LYS37
|
4.0
|
19.5
|
1.0
|
|
CA
|
B:LYS37
|
4.1
|
16.5
|
1.0
|
|
C
|
B:ALA36
|
4.1
|
17.0
|
1.0
|
|
CB
|
B:THR56
|
4.1
|
17.0
|
1.0
|
|
C
|
B:SER55
|
4.3
|
19.2
|
1.0
|
|
HB3
|
B:SER55
|
4.3
|
16.8
|
1.0
|
|
CB
|
B:ALA36
|
4.4
|
17.9
|
1.0
|
|
HA
|
B:PRO38
|
4.4
|
17.2
|
1.0
|
|
CA
|
B:THR56
|
4.4
|
15.8
|
1.0
|
|
H
|
B:PHE57
|
4.5
|
18.5
|
1.0
|
|
CB
|
B:LYS37
|
4.5
|
27.5
|
1.0
|
|
HB2
|
B:ALA36
|
4.7
|
21.4
|
1.0
|
|
N
|
B:PRO38
|
4.7
|
17.5
|
1.0
|
|
O
|
B:HOH315
|
4.8
|
37.0
|
1.0
|
|
OG
|
B:SER55
|
4.9
|
14.6
|
1.0
|
|
HG3
|
B:LYS37
|
4.9
|
31.9
|
1.0
|
|
O
|
B:LEU35
|
5.0
|
14.3
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 6xvy
Go back to
Chlorine Binding Sites List in 6xvy
Chlorine binding site 2 out
of 4 in the Human Myelin Protein P2 Mutant R88Q
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Human Myelin Protein P2 Mutant R88Q within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl202
b:36.9
occ:1.00
|
H
|
C:LYS37
|
2.4
|
20.1
|
1.0
|
|
H
|
C:THR56
|
2.6
|
29.2
|
1.0
|
|
O
|
C:HOH463
|
2.7
|
45.6
|
1.0
|
|
HB2
|
C:SER55
|
2.7
|
29.5
|
1.0
|
|
HA
|
C:ALA36
|
3.2
|
22.5
|
1.0
|
|
N
|
C:LYS37
|
3.2
|
16.8
|
1.0
|
|
HB
|
C:THR56
|
3.3
|
34.5
|
1.0
|
|
N
|
C:THR56
|
3.4
|
24.3
|
1.0
|
|
HA
|
C:SER55
|
3.5
|
16.5
|
1.0
|
|
CB
|
C:SER55
|
3.6
|
24.6
|
1.0
|
|
HB1
|
C:ALA36
|
3.8
|
20.5
|
1.0
|
|
OG1
|
C:THR56
|
3.8
|
36.1
|
1.0
|
|
O
|
C:LYS37
|
3.8
|
16.7
|
1.0
|
|
C
|
C:LYS37
|
3.9
|
17.5
|
1.0
|
|
HG1
|
C:THR56
|
3.9
|
43.4
|
1.0
|
|
HB2
|
C:LYS37
|
3.9
|
25.9
|
1.0
|
|
CB
|
C:THR56
|
3.9
|
28.8
|
1.0
|
|
CA
|
C:ALA36
|
3.9
|
18.7
|
1.0
|
|
CA
|
C:SER55
|
4.0
|
13.7
|
1.0
|
|
HB3
|
C:SER55
|
4.0
|
29.5
|
1.0
|
|
HA
|
C:PRO38
|
4.1
|
17.5
|
1.0
|
|
CA
|
C:LYS37
|
4.1
|
17.8
|
1.0
|
|
C
|
C:ALA36
|
4.1
|
15.8
|
1.0
|
|
HE2
|
C:PHE57
|
4.1
|
51.2
|
1.0
|
|
C
|
C:SER55
|
4.2
|
21.4
|
1.0
|
|
CB
|
C:ALA36
|
4.3
|
17.1
|
1.0
|
|
CA
|
C:THR56
|
4.3
|
23.8
|
1.0
|
|
HD2
|
C:PHE57
|
4.4
|
46.0
|
1.0
|
|
N
|
C:PRO38
|
4.4
|
14.5
|
1.0
|
|
CE2
|
C:PHE57
|
4.5
|
42.7
|
1.0
|
|
CB
|
C:LYS37
|
4.5
|
21.6
|
1.0
|
|
H
|
C:PHE57
|
4.6
|
22.9
|
1.0
|
|
HB2
|
C:ALA36
|
4.6
|
20.5
|
1.0
|
|
OG
|
C:SER55
|
4.6
|
30.8
|
1.0
|
|
CD2
|
C:PHE57
|
4.6
|
38.4
|
1.0
|
|
HZ2
|
C:LYS9
|
4.7
|
62.1
|
1.0
|
|
CA
|
C:PRO38
|
4.7
|
14.6
|
1.0
|
|
HZ1
|
C:LYS9
|
4.8
|
62.1
|
1.0
|
|
HA
|
C:LYS37
|
4.9
|
21.3
|
1.0
|
|
HD3
|
C:PRO38
|
5.0
|
22.7
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 6xvy
Go back to
Chlorine Binding Sites List in 6xvy
Chlorine binding site 3 out
of 4 in the Human Myelin Protein P2 Mutant R88Q
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Human Myelin Protein P2 Mutant R88Q within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl202
b:44.9
occ:1.00
|
H
|
D:LYS37
|
2.6
|
24.9
|
1.0
|
|
H
|
D:THR56
|
2.7
|
37.9
|
1.0
|
|
HG1
|
D:THR56
|
2.8
|
32.0
|
1.0
|
|
HB2
|
D:SER55
|
2.9
|
25.1
|
1.0
|
|
HA
|
D:ALA36
|
3.2
|
23.9
|
1.0
|
|
HA
|
D:SER55
|
3.2
|
22.4
|
1.0
|
|
N
|
D:LYS37
|
3.4
|
20.8
|
1.0
|
|
N
|
D:THR56
|
3.5
|
31.6
|
1.0
|
|
OG1
|
D:THR56
|
3.7
|
26.7
|
1.0
|
|
HB1
|
D:ALA36
|
3.7
|
24.0
|
1.0
|
|
CB
|
D:SER55
|
3.7
|
20.9
|
1.0
|
|
CA
|
D:SER55
|
3.8
|
18.7
|
1.0
|
|
O
|
D:LYS37
|
3.9
|
20.9
|
1.0
|
|
CA
|
D:ALA36
|
4.0
|
19.9
|
1.0
|
|
O
|
D:HOH375
|
4.0
|
49.5
|
1.0
|
|
C
|
D:LYS37
|
4.0
|
20.9
|
1.0
|
|
HB3
|
D:SER55
|
4.0
|
25.1
|
1.0
|
|
HB
|
D:THR56
|
4.1
|
32.7
|
1.0
|
|
HA
|
D:PRO38
|
4.1
|
19.5
|
1.0
|
|
C
|
D:SER55
|
4.2
|
19.8
|
1.0
|
|
C
|
D:ALA36
|
4.2
|
20.8
|
1.0
|
|
CB
|
D:ALA36
|
4.2
|
20.0
|
1.0
|
|
HB2
|
D:LYS37
|
4.2
|
35.0
|
1.0
|
|
CA
|
D:LYS37
|
4.3
|
19.8
|
1.0
|
|
CB
|
D:THR56
|
4.3
|
27.3
|
1.0
|
|
O
|
D:HOH372
|
4.4
|
32.0
|
1.0
|
|
HB2
|
D:ALA36
|
4.5
|
24.0
|
1.0
|
|
CA
|
D:THR56
|
4.5
|
23.2
|
1.0
|
|
N
|
D:PRO38
|
4.6
|
14.7
|
1.0
|
|
OG
|
D:SER55
|
4.8
|
29.4
|
1.0
|
|
CA
|
D:PRO38
|
4.8
|
16.3
|
1.0
|
|
CB
|
D:LYS37
|
4.8
|
29.2
|
1.0
|
|
HZ2
|
D:LYS9
|
4.9
|
45.8
|
1.0
|
|
HA
|
D:THR56
|
5.0
|
27.8
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 6xvy
Go back to
Chlorine Binding Sites List in 6xvy
Chlorine binding site 4 out
of 4 in the Human Myelin Protein P2 Mutant R88Q
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Human Myelin Protein P2 Mutant R88Q within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl202
b:33.6
occ:1.00
|
O
|
E:HOH318
|
2.0
|
36.8
|
1.0
|
|
HG
|
E:SER55
|
2.2
|
19.1
|
0.6
|
|
H
|
E:LYS37
|
2.3
|
18.5
|
1.0
|
|
HG22
|
E:THR56
|
2.7
|
27.2
|
0.5
|
|
H
|
E:THR56
|
2.7
|
23.8
|
0.6
|
|
HG1
|
E:THR56
|
2.8
|
27.1
|
0.6
|
|
H
|
E:THR56
|
2.8
|
23.9
|
0.5
|
|
HB2
|
E:SER55
|
2.9
|
26.1
|
0.5
|
|
OG
|
E:SER55
|
3.1
|
15.9
|
0.6
|
|
HA
|
E:ALA36
|
3.1
|
15.8
|
1.0
|
|
N
|
E:LYS37
|
3.2
|
15.4
|
1.0
|
|
HA
|
E:SER55
|
3.3
|
24.1
|
0.6
|
|
HA
|
E:SER55
|
3.3
|
24.1
|
0.5
|
|
N
|
E:THR56
|
3.5
|
19.8
|
0.6
|
|
CG2
|
E:THR56
|
3.6
|
22.6
|
0.5
|
|
N
|
E:THR56
|
3.6
|
19.9
|
0.5
|
|
HB1
|
E:ALA36
|
3.6
|
23.7
|
1.0
|
|
OG1
|
E:THR56
|
3.7
|
22.6
|
0.6
|
|
HB2
|
E:SER55
|
3.7
|
26.1
|
0.6
|
|
CB
|
E:SER55
|
3.7
|
21.8
|
0.5
|
|
CB
|
E:SER55
|
3.8
|
21.8
|
0.6
|
|
HG23
|
E:THR56
|
3.8
|
27.2
|
0.5
|
|
O
|
E:LYS37
|
3.8
|
18.9
|
1.0
|
|
CA
|
E:ALA36
|
3.9
|
13.2
|
1.0
|
|
HB2
|
E:LYS37
|
3.9
|
28.2
|
1.0
|
|
CA
|
E:SER55
|
3.9
|
20.1
|
0.6
|
|
C
|
E:LYS37
|
3.9
|
17.3
|
1.0
|
|
CA
|
E:SER55
|
3.9
|
20.1
|
0.5
|
|
HG21
|
E:THR56
|
4.0
|
30.4
|
0.6
|
|
C
|
E:ALA36
|
4.0
|
14.0
|
1.0
|
|
CA
|
E:LYS37
|
4.0
|
22.0
|
1.0
|
|
HG23
|
E:THR56
|
4.1
|
30.4
|
0.6
|
|
HG21
|
E:THR56
|
4.1
|
27.2
|
0.5
|
|
HA
|
E:PRO38
|
4.1
|
18.0
|
1.0
|
|
CB
|
E:ALA36
|
4.2
|
19.7
|
1.0
|
|
HB3
|
E:SER55
|
4.2
|
26.1
|
0.5
|
|
C
|
E:SER55
|
4.2
|
19.9
|
0.6
|
|
H
|
E:PHE57
|
4.3
|
26.8
|
0.5
|
|
HD2
|
E:PHE57
|
4.3
|
25.1
|
1.0
|
|
C
|
E:SER55
|
4.3
|
20.0
|
0.5
|
|
CG2
|
E:THR56
|
4.3
|
25.4
|
0.6
|
|
H
|
E:PHE57
|
4.3
|
26.8
|
0.6
|
|
CB
|
E:THR56
|
4.4
|
20.2
|
0.6
|
|
HE2
|
E:PHE57
|
4.4
|
46.1
|
1.0
|
|
HB2
|
E:ALA36
|
4.5
|
23.7
|
1.0
|
|
N
|
E:PRO38
|
4.5
|
15.6
|
1.0
|
|
CB
|
E:LYS37
|
4.5
|
23.5
|
1.0
|
|
CA
|
E:THR56
|
4.5
|
23.5
|
0.6
|
|
CB
|
E:THR56
|
4.5
|
20.6
|
0.5
|
|
HB
|
E:THR56
|
4.6
|
24.7
|
0.5
|
|
CD2
|
E:PHE57
|
4.6
|
20.9
|
1.0
|
|
CA
|
E:THR56
|
4.6
|
23.6
|
0.5
|
|
OG
|
E:SER55
|
4.7
|
18.2
|
0.5
|
|
HB3
|
E:SER55
|
4.7
|
26.1
|
0.6
|
|
O
|
E:HOH335
|
4.7
|
28.8
|
1.0
|
|
CE2
|
E:PHE57
|
4.7
|
38.4
|
1.0
|
|
HZ1
|
E:LYS9
|
4.8
|
42.1
|
1.0
|
|
CA
|
E:PRO38
|
4.8
|
15.0
|
1.0
|
|
HA
|
E:LYS37
|
4.9
|
26.4
|
1.0
|
|
N
|
E:PHE57
|
5.0
|
22.4
|
1.0
|
|
HD3
|
E:PRO38
|
5.0
|
19.6
|
1.0
|
|
Reference:
S.Ruskamo,
O.C.Krokengen,
J.Kowal,
T.Nieminen,
M.Lehtimaki,
A.Raassakka,
S.Laulumaa,
B.P.Dandey,
I.Vattulainen,
H.Stahlberg,
P.Kursula.
Human Myelin Protein P2: Determinants For Forming A Supramolecular Proteolipid Lattice To Be Published.
Page generated: Mon Jul 29 17:24:45 2024
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