Chlorine in PDB 6ybi: Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip.

Enzymatic activity of Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip.

All present enzymatic activity of Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip.:
3.2.1.17;

Protein crystallography data

The structure of Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip., PDB code: 6ybi was solved by J.A.Gavira, S.Martinez-Rodriguez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.58 / 1.12
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.170, 79.170, 37.960, 90.00, 90.00, 90.00
R / Rfree (%) 13.3 / 15.3

Other elements in 6ybi:

The structure of Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip. also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip. (pdb code 6ybi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip., PDB code: 6ybi:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6ybi

Go back to Chlorine Binding Sites List in 6ybi
Chlorine binding site 1 out of 2 in the Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:62.3
occ:1.00
CE2 A:PHE38 3.7 19.9 1.0
NZ A:LYS33 3.9 34.9 1.0
CZ3 A:TRP123 4.1 26.0 1.0
CE A:LYS33 4.2 30.4 1.0
CD A:LYS33 4.2 25.1 1.0
CZ A:PHE38 4.4 18.2 1.0
CD A:ARG5 4.4 25.0 1.0
CB A:ARG5 4.4 22.1 1.0
CD2 A:PHE38 4.6 18.6 1.0
CG A:ARG5 4.8 22.4 1.0
NE A:ARG5 5.0 26.9 1.0
CE3 A:TRP123 5.0 23.2 1.0
CH2 A:TRP123 5.0 27.1 1.0

Chlorine binding site 2 out of 2 in 6ybi

Go back to Chlorine Binding Sites List in 6ybi
Chlorine binding site 2 out of 2 in the Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:33.4
occ:1.00
OH A:TYR23 2.8 17.8 1.0
O A:HOH355 3.0 27.8 1.0
CZ A:TYR23 3.5 15.9 1.0
CE2 A:TYR23 3.6 16.3 1.0
CE1 A:TYR23 4.5 16.1 1.0
CA A:GLY104 4.6 17.7 1.0
O A:ARG21 4.6 23.1 1.0
CD2 A:TYR23 4.8 16.2 1.0

Reference:

J.A.Gavira, I.Rodriguez-Ruiz, S.Martinez-Rodriguez, S.Basu, S.Teychene, A.A.Mccarthy, C.Mueller-Dieckman. Attaining Atomic Resolution From in Situ Data Collection at Room Temperature Using Counter-Diffusion-Based Low-Cost Microchips. Acta Crystallogr D Struct V. 76 751 2020BIOL.
ISSN: ISSN 2059-7983
PubMed: 32744257
DOI: 10.1107/S2059798320008475
Page generated: Sat Dec 12 14:41:25 2020

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