Atomistry » Chlorine » PDB 6y80-6yf2 » 6yd5
Atomistry »
  Chlorine »
    PDB 6y80-6yf2 »
      6yd5 »

Chlorine in PDB 6yd5: Saftsz-UCM151 (Comp. 18)

Protein crystallography data

The structure of Saftsz-UCM151 (Comp. 18), PDB code: 6yd5 was solved by C.Fernandez-Tornero, F.M.Ruiz, J.M.Andreu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.22 / 1.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.404, 50.182, 88.6, 90, 111.49, 90
R / Rfree (%) 18.4 / 23.4

Other elements in 6yd5:

The structure of Saftsz-UCM151 (Comp. 18) also contains other interesting chemical elements:

Potassium (K) 1 atom
Fluorine (F) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Saftsz-UCM151 (Comp. 18) (pdb code 6yd5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Saftsz-UCM151 (Comp. 18), PDB code: 6yd5:

Chlorine binding site 1 out of 1 in 6yd5

Go back to Chlorine Binding Sites List in 6yd5
Chlorine binding site 1 out of 1 in the Saftsz-UCM151 (Comp. 18)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Saftsz-UCM151 (Comp. 18) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:45.4
occ:1.00
CL A:OM8404 0.0 45.4 1.0
C9 A:OM8404 1.8 40.5 1.0
C8 A:OM8404 2.7 37.5 1.0
C10 A:OM8404 2.8 39.3 1.0
H81 A:OM8404 2.8 45.0 1.0
H101 A:OM8404 2.9 47.1 1.0
HA3 A:GLY196 2.9 29.8 1.0
HA2 A:GLY193 3.1 28.5 1.0
HE2 A:MET226 3.3 38.6 1.0
HB3 A:MET226 3.7 39.0 1.0
O A:GLN192 3.8 25.2 1.0
HB A:THR309 3.8 32.8 1.0
CA A:GLY196 3.8 24.8 1.0
HG13 A:ILE311 4.0 36.5 1.0
C7 A:OM8404 4.0 34.1 1.0
CA A:GLY193 4.0 23.7 1.0
O A:GLY193 4.0 26.0 1.0
C11 A:OM8404 4.0 38.1 1.0
H A:GLY196 4.2 29.2 1.0
HD11 A:ILE311 4.2 39.2 1.0
CE A:MET226 4.2 32.2 1.0
HG12 A:ILE311 4.3 36.5 1.0
HA2 A:GLY196 4.3 29.8 1.0
HD13 A:ILE197 4.4 28.3 1.0
H A:ILE197 4.4 29.8 1.0
C A:GLY196 4.4 25.9 1.0
HE3 A:MET226 4.4 38.6 1.0
HG12 A:ILE197 4.5 28.4 1.0
C A:GLY193 4.5 24.0 1.0
N A:GLY196 4.5 24.3 1.0
HG2 A:MET226 4.5 37.2 1.0
CG1 A:ILE311 4.5 30.4 1.0
C12 A:OM8404 4.6 35.9 1.0
O A:GLY227 4.6 28.1 1.0
C A:GLN192 4.6 24.5 1.0
N A:ILE197 4.6 24.8 1.0
HG22 A:THR309 4.6 31.7 1.0
HA3 A:GLY193 4.6 28.5 1.0
CB A:MET226 4.6 32.5 1.0
HA A:MET226 4.6 39.0 1.0
CB A:THR309 4.7 27.4 1.0
N A:GLY193 4.7 23.3 1.0
H A:VAL310 4.7 27.4 1.0
HG21 A:THR309 4.7 31.7 1.0
HE1 A:MET226 4.7 38.6 1.0
H A:GLY227 4.8 38.3 1.0
H111 A:OM8404 4.8 45.7 1.0
O A:HOH601 4.8 29.6 1.0
O A:VAL310 4.9 24.5 1.0
CD1 A:ILE311 4.9 32.7 1.0
CG2 A:THR309 4.9 26.4 1.0
N A:GLY227 4.9 31.9 1.0
CG A:MET226 5.0 31.0 1.0
CA A:MET226 5.0 32.5 1.0
C A:MET226 5.0 35.2 1.0
HB A:ILE228 5.0 38.1 1.0

Reference:

S.Huecas, L.Araujo-Bazan, F.M.Ruiz, L.B.Ruiz-Avila, R.F.Martinez, A.Escobar-Pena, M.Artola, H.Vazquez-Villa, M.Martin-Fontecha, C.Fernandez-Tornero, M.L.Lopez-Rodriguez, J.M.Andreu. Targeting the Ftsz Allosteric Binding Site with A Novel Fluorescence Polarization Screen, Cytological and Structural Approaches For Antibacterial Discovery. J.Med.Chem. V. 64 5730 2021.
ISSN: ISSN 0022-2623
PubMed: 33908781
DOI: 10.1021/ACS.JMEDCHEM.0C02207
Page generated: Mon Jul 29 17:38:30 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy