Chlorine in PDB 6yhn: Crystal Structure of Domains 4-5 of Cnfy From Yersinia Pseudotuberculosis

The structure of Crystal Structure of Domains 4-5 of Cnfy From Yersinia Pseudotuberculosis, PDB code: 6yhn was solved by P.Lukat, E.M.Gazdag, T.V.Heidler, W.Blankenfeldt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.27 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.271, 90.531, 120.717, 90, 90, 90
R / Rfree (%)	15.8 / 19.1

The structure of Crystal Structure of Domains 4-5 of Cnfy From Yersinia Pseudotuberculosis also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Sodium	(Na)	2 atoms

The binding sites of Chlorine atom in the Crystal Structure of Domains 4-5 of Cnfy From Yersinia Pseudotuberculosis (pdb code 6yhn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Domains 4-5 of Cnfy From Yersinia Pseudotuberculosis, PDB code: 6yhn:

Chlorine binding site 1 out of 1 in the Crystal Structure of Domains 4-5 of Cnfy From Yersinia Pseudotuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Domains 4-5 of Cnfy From Yersinia Pseudotuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1208 b:29.3 occ:1.00 H A:GLU753 2.2 23.8 1.0 HH21 A:ARG652 2.5 44.4 1.0 O A:HOH1419 2.9 22.2 1.0 HA A:ARG752 3.1 22.8 1.0 N A:GLU753 3.1 19.8 1.0 O A:HOH1320 3.3 29.0 1.0 HB3 A:GLU753 3.3 32.0 1.0 HB3 A:SER780 3.3 36.5 1.0 NH2 A:ARG652 3.3 37.0 1.0 HB2 A:GLU753 3.4 32.0 1.0 HH22 A:ARG652 3.6 44.4 1.0 O A:HOH1631 3.6 55.7 1.0 CB A:GLU753 3.7 26.7 1.0 HG23 A:THR649 3.8 30.8 1.0 HD3 A:ARG752 3.8 32.0 1.0 HE A:ARG652 3.9 32.4 1.0 CA A:ARG752 3.9 19.0 1.0 HD2 A:ARG752 3.9 32.0 1.0 C A:ARG752 4.0 17.8 1.0 CA A:GLU753 4.0 23.7 1.0 HB3 A:ARG752 4.1 24.1 1.0 O A:HOH1473 4.1 41.5 1.0 HG22 A:THR649 4.1 30.8 1.0 CB A:SER780 4.2 30.5 1.0 CD A:ARG752 4.3 26.6 1.0 CZ A:ARG652 4.3 35.3 1.0 CG2 A:THR649 4.4 25.6 1.0 HB2 A:SER780 4.4 36.5 1.0 NE A:ARG652 4.5 27.0 1.0 HA A:SER780 4.5 30.2 1.0 CB A:ARG752 4.5 20.1 1.0 HA A:GLU753 4.7 28.4 1.0 O A:GLU753 4.7 24.4 1.0 CA A:SER780 4.8 25.2 1.0 O A:LEU751 4.8 18.3 1.0 O A:THR649 4.8 18.0 1.0 HG21 A:THR649 4.8 30.8 1.0 N A:SER780 4.8 26.6 1.0 H A:SER780 4.8 32.0 1.0 O A:HOH1337 4.9 28.6 1.0 C A:GLU753 4.9 24.6 1.0 OE1 A:GLU753 4.9 29.9 1.0 HA A:ASP779 4.9 30.1 1.0 N A:ARG752 5.0 16.5 1.0

P.Chaoprasid, P.Lukat, S.Muhlen, T.Heidler, E.M.Gazdag, S.Dong, W.Bi, C.Ruter, M.Kirchenwitz, A.Steffen, L.Jansch, T.E.B.Stradal, P.Dersch, W.Blankenfeldt. Crystal Structure of Bacterial Cytotoxic Necrotizing Factor Cnf Y Reveals Molecular Building Blocks For Intoxication. Embo J. 05202 2021.
ISSN: ESSN 1460-2075
PubMed: 33410511
DOI: 10.15252/EMBJ.2020105202