Chlorine in PDB 6yj9: Darb in Complex with 3'3'Cgamp

Protein crystallography data

The structure of Darb in Complex with 3'3'Cgamp, PDB code: 6yj9 was solved by J.L.Heidemann, P.Neumann, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.68 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.49, 69.92, 105.78, 90, 90, 90
R / Rfree (%) 15.3 / 19.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Darb in Complex with 3'3'Cgamp (pdb code 6yj9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Darb in Complex with 3'3'Cgamp, PDB code: 6yj9:

Chlorine binding site 1 out of 1 in 6yj9

Go back to Chlorine Binding Sites List in 6yj9
Chlorine binding site 1 out of 1 in the Darb in Complex with 3'3'Cgamp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Darb in Complex with 3'3'Cgamp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:24.0
occ:0.57
O B:HOH419 2.8 26.2 1.0
NH1 A:ARG131 3.0 21.8 1.0
NH1 B:ARG131 3.2 21.2 1.0
CD B:ARG131 3.5 18.1 1.0
CD A:ARG131 3.5 19.6 1.0
O A:HOH447 3.8 39.6 1.0
O B:HOH326 4.0 25.8 1.0
CZ A:ARG131 4.1 20.2 1.0
CZ B:ARG131 4.1 20.1 1.0
CA B:GLY114 4.2 19.8 1.0
NE B:ARG131 4.2 19.2 1.0
NE A:ARG131 4.2 19.0 1.0
CA A:GLY114 4.3 23.1 1.0
CG B:ARG131 4.5 18.3 1.0
CB B:ARG131 4.5 18.4 1.0
C5' B:4BW201 4.6 17.1 1.0
CG A:ARG131 4.7 18.9 1.0
CB A:ARG131 4.7 20.1 1.0
CAN B:4BW201 4.8 18.2 1.0
CAN A:4BW201 4.8 21.0 1.0
O B:GLY114 4.8 18.6 1.0
OAZ B:4BW201 4.9 17.6 1.0
O A:GLY114 5.0 22.8 1.0

Reference:

J.L.Heidemann, P.Neumann, R.Ficner. Darb From B. Subtilis To Be Published.
Page generated: Sat Apr 17 15:10:57 2021

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