Chlorine in PDB 6yja: Darb Fom B. Subtilis in Complex with C-Di-Amp

Protein crystallography data

The structure of Darb Fom B. Subtilis in Complex with C-Di-Amp, PDB code: 6yja was solved by J.L.Heidemann, P.Neumann, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.91 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.15, 65.41, 104.85, 90, 90, 90
R / Rfree (%) 18.3 / 21.1

Other elements in 6yja:

The structure of Darb Fom B. Subtilis in Complex with C-Di-Amp also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Darb Fom B. Subtilis in Complex with C-Di-Amp (pdb code 6yja). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Darb Fom B. Subtilis in Complex with C-Di-Amp, PDB code: 6yja:

Chlorine binding site 1 out of 1 in 6yja

Go back to Chlorine Binding Sites List in 6yja
Chlorine binding site 1 out of 1 in the Darb Fom B. Subtilis in Complex with C-Di-Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Darb Fom B. Subtilis in Complex with C-Di-Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:29.1
occ:1.00
O B:HOH400 2.9 32.2 1.0
O A:HOH401 3.0 45.1 1.0
NH1 A:ARG131 3.1 22.5 1.0
NH1 B:ARG131 3.2 22.0 1.0
CD B:ARG131 3.6 17.6 1.0
CD A:ARG131 3.7 19.5 1.0
CA B:GLY114 4.0 17.5 1.0
O B:HOH321 4.1 34.6 1.0
CZ A:ARG131 4.2 24.6 1.0
CZ B:ARG131 4.2 20.4 1.0
NE B:ARG131 4.3 17.5 1.0
NE A:ARG131 4.4 20.2 1.0
C5'1 B:2BA201 4.5 20.2 1.0
CA A:GLY114 4.5 19.9 1.0
C5' B:2BA201 4.6 17.9 1.0
CG B:ARG131 4.6 16.7 1.0
CB B:ARG131 4.7 19.1 1.0
C5' A:2BA201 4.8 18.9 1.0
O B:GLY114 4.9 19.1 1.0
O3'1 B:2BA201 4.9 15.7 1.0
CG A:ARG131 4.9 15.7 1.0
CB A:ARG131 4.9 21.4 1.0
C B:GLY114 5.0 17.3 1.0

Reference:

J.L.Heidemann, P.Neumann, R.Ficner. Darb From B. Subtilis To Be Published.
Page generated: Sat Apr 17 15:10:55 2021

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