Chlorine in PDB 6yji: Structure of FGCELDH7C
Protein crystallography data
The structure of Structure of FGCELDH7C, PDB code: 6yji
was solved by
M.H.Momeni,
F.Fredslund,
J.G.Berrin,
M.A.Hachem,
D.H.Welner,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
53.18 /
1.64
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
96.536,
187.821,
55.447,
90,
90,
90
|
R / Rfree (%)
|
16.4 /
20.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of FGCELDH7C
(pdb code 6yji). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Structure of FGCELDH7C, PDB code: 6yji:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 6yji
Go back to
Chlorine Binding Sites List in 6yji
Chlorine binding site 1 out
of 2 in the Structure of FGCELDH7C
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of FGCELDH7C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl612
b:38.9
occ:1.00
|
OD1
|
A:ASP233
|
2.5
|
32.3
|
0.4
|
HG2
|
A:PRO291
|
3.0
|
32.7
|
1.0
|
HB2
|
A:LYS234
|
3.0
|
34.0
|
1.0
|
H
|
A:LYS234
|
3.0
|
29.0
|
0.6
|
HB3
|
A:PHE232
|
3.0
|
26.2
|
1.0
|
H
|
A:LYS234
|
3.1
|
29.0
|
0.4
|
HD2
|
A:PRO291
|
3.3
|
32.2
|
1.0
|
H
|
A:ASP233
|
3.5
|
31.5
|
0.4
|
H
|
A:ASP233
|
3.5
|
29.9
|
0.6
|
HD2
|
A:LYS234
|
3.5
|
53.2
|
1.0
|
O
|
A:HOH988
|
3.5
|
23.3
|
1.0
|
HB2
|
A:ASP233
|
3.6
|
28.2
|
0.6
|
HD2
|
A:PHE232
|
3.7
|
25.3
|
1.0
|
N
|
A:LYS234
|
3.7
|
24.2
|
1.0
|
CG
|
A:ASP233
|
3.7
|
27.9
|
0.4
|
CG
|
A:PRO291
|
3.7
|
27.2
|
1.0
|
CB
|
A:LYS234
|
3.8
|
28.3
|
1.0
|
HG3
|
A:LYS234
|
3.8
|
35.9
|
1.0
|
CD
|
A:PRO291
|
3.8
|
26.9
|
1.0
|
N
|
A:ASP233
|
4.0
|
24.9
|
0.6
|
N
|
A:ASP233
|
4.0
|
26.3
|
0.4
|
HD3
|
A:PRO291
|
4.0
|
32.2
|
1.0
|
CB
|
A:PHE232
|
4.0
|
21.8
|
1.0
|
CG
|
A:LYS234
|
4.1
|
29.9
|
1.0
|
CD
|
A:LYS234
|
4.2
|
44.4
|
1.0
|
CA
|
A:LYS234
|
4.3
|
24.4
|
1.0
|
HG3
|
A:PRO291
|
4.3
|
32.7
|
1.0
|
O
|
A:LYS234
|
4.4
|
25.8
|
1.0
|
OD2
|
A:ASP233
|
4.4
|
37.9
|
0.4
|
CD2
|
A:PHE232
|
4.4
|
21.1
|
1.0
|
CB
|
A:ASP233
|
4.4
|
23.5
|
0.6
|
HB2
|
A:PHE232
|
4.4
|
26.2
|
1.0
|
C
|
A:ASP233
|
4.5
|
23.3
|
0.4
|
CA
|
A:ASP233
|
4.5
|
24.8
|
0.6
|
HB3
|
A:LYS234
|
4.5
|
34.0
|
1.0
|
C
|
A:ASP233
|
4.6
|
22.2
|
0.6
|
HB2
|
A:PRO291
|
4.6
|
31.6
|
1.0
|
HA
|
A:PHE232
|
4.6
|
34.8
|
1.0
|
CA
|
A:ASP233
|
4.6
|
25.4
|
0.4
|
C
|
A:PHE232
|
4.7
|
25.8
|
1.0
|
CG
|
A:PHE232
|
4.7
|
21.5
|
1.0
|
C
|
A:LYS234
|
4.7
|
24.6
|
1.0
|
CA
|
A:PHE232
|
4.7
|
29.0
|
1.0
|
CB
|
A:ASP233
|
4.8
|
26.4
|
0.4
|
CB
|
A:PRO291
|
4.8
|
26.3
|
1.0
|
HE3
|
A:LYS234
|
4.8
|
71.0
|
1.0
|
HZ2
|
A:LYS234
|
4.8
|
80.6
|
1.0
|
HB3
|
A:ASP233
|
4.9
|
28.2
|
0.6
|
HD3
|
A:LYS234
|
4.9
|
53.2
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 6yji
Go back to
Chlorine Binding Sites List in 6yji
Chlorine binding site 2 out
of 2 in the Structure of FGCELDH7C
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of FGCELDH7C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl611
b:40.1
occ:1.00
|
H
|
B:LYS234
|
3.0
|
35.4
|
1.0
|
HB3
|
B:PHE232
|
3.2
|
37.8
|
1.0
|
HB2
|
B:LYS234
|
3.3
|
34.9
|
1.0
|
HB2
|
B:ASP233
|
3.3
|
45.2
|
1.0
|
H
|
B:ASP233
|
3.4
|
35.1
|
1.0
|
HG2
|
B:PRO291
|
3.5
|
40.2
|
1.0
|
HG3
|
B:LYS234
|
3.5
|
34.9
|
1.0
|
HD2
|
B:PRO291
|
3.6
|
40.7
|
1.0
|
N
|
B:LYS234
|
3.7
|
29.5
|
1.0
|
N
|
B:ASP233
|
3.9
|
29.3
|
1.0
|
CB
|
B:LYS234
|
4.0
|
29.1
|
1.0
|
HD1
|
B:PHE232
|
4.0
|
40.9
|
1.0
|
CG
|
B:LYS234
|
4.1
|
29.1
|
1.0
|
HD2
|
B:LYS234
|
4.1
|
57.8
|
1.0
|
CB
|
B:PHE232
|
4.1
|
31.5
|
1.0
|
CB
|
B:ASP233
|
4.1
|
37.7
|
1.0
|
CD
|
B:PRO291
|
4.2
|
33.9
|
1.0
|
CG
|
B:PRO291
|
4.3
|
33.5
|
1.0
|
HD3
|
B:PRO291
|
4.3
|
40.7
|
1.0
|
CA
|
B:LYS234
|
4.4
|
26.1
|
1.0
|
CA
|
B:ASP233
|
4.4
|
29.1
|
1.0
|
O
|
B:HOH703
|
4.4
|
44.7
|
1.0
|
C
|
B:ASP233
|
4.5
|
28.9
|
1.0
|
O
|
B:LYS234
|
4.5
|
26.7
|
1.0
|
HA
|
B:PHE232
|
4.6
|
47.3
|
1.0
|
HB3
|
B:ASP233
|
4.6
|
45.2
|
1.0
|
HB2
|
B:PHE232
|
4.6
|
37.8
|
1.0
|
C
|
B:PHE232
|
4.6
|
32.0
|
1.0
|
CD
|
B:LYS234
|
4.7
|
48.2
|
1.0
|
CD1
|
B:PHE232
|
4.7
|
34.1
|
1.0
|
CA
|
B:PHE232
|
4.7
|
39.4
|
1.0
|
HG3
|
B:PRO291
|
4.7
|
40.2
|
1.0
|
HB3
|
B:LYS234
|
4.8
|
34.9
|
1.0
|
CG
|
B:PHE232
|
4.9
|
28.6
|
1.0
|
C
|
B:LYS234
|
4.9
|
28.9
|
1.0
|
HG2
|
B:LYS234
|
5.0
|
34.9
|
1.0
|
HE3
|
B:LYS234
|
5.0
|
84.9
|
1.0
|
|
Reference:
F.Fredslund,
M.Haddad Momeni.
Structures of AA7 Enzymes To Be Published.
Page generated: Mon Jul 29 17:46:40 2024
|