Atomistry » Chlorine » PDB 6yf3-6ynj » 6yjx
Atomistry »
  Chlorine »
    PDB 6yf3-6ynj »
      6yjx »

Chlorine in PDB 6yjx: Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide

Enzymatic activity of Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide

All present enzymatic activity of Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide, PDB code: 6yjx was solved by A.Schiefner, A.Skerra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.11 / 1.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.468, 79.468, 37.848, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 17.5

Other elements in 6yjx:

The structure of Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide (pdb code 6yjx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide, PDB code: 6yjx:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6yjx

Go back to Chlorine Binding Sites List in 6yjx
Chlorine binding site 1 out of 4 in the Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:16.7
occ:1.00
 OH A:TYR23 3.1 12.6 1.0
O A:HOH360 3.2 16.7 1.0
CZ A:TYR23 3.7 10.5 1.0
CE2 A:TYR23 3.8 10.7 1.0
CA A:GLY104 4.2 12.5 1.0
O A:ARG21 4.6 14.9 0.5
O A:ARG21 4.6 14.5 0.5
N A:GLY104 4.8 12.8 1.0
CE1 A:TYR23 4.9 10.3 1.0

Chlorine binding site 2 out of 4 in 6yjx

Go back to Chlorine Binding Sites List in 6yjx
Chlorine binding site 2 out of 4 in the Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:23.9
occ:1.00
 O A:HOH385 3.1 14.8 1.0
N A:THR69 3.1 12.8 1.0
O A:THR69 3.3 16.8 1.0
O A:HOH324 3.3 41.0 1.0
N A:ARG68 3.5 13.7 1.0
C A:GLY67 3.5 15.1 1.0
C A:THR69 3.6 13.3 1.0
CA A:GLY67 3.7 14.8 1.0
N A:GLY67 3.7 12.8 1.0
OG A:SER72 3.7 22.2 1.0
OD1 A:ASN65 3.7 17.3 1.0
CA A:THR69 3.8 13.2 1.0
O A:HOH413 4.0 25.0 1.0
CB A:THR69 4.1 13.2 1.0
C A:ARG68 4.2 15.9 1.0
O A:GLY67 4.2 17.6 1.0
OD1 A:ASP66 4.2 11.3 1.0
CA A:ARG68 4.3 14.7 1.0
N A:PRO70 4.6 16.9 1.0
NA A:NA205 4.7 18.5 1.0
OG1 A:THR69 4.8 13.0 1.0
C A:ASP66 4.8 11.5 1.0
N A:ASP66 4.9 11.0 1.0
CG A:ASN65 4.9 15.8 1.0
CB A:SER72 5.0 22.3 1.0

Chlorine binding site 3 out of 4 in 6yjx

Go back to Chlorine Binding Sites List in 6yjx
Chlorine binding site 3 out of 4 in the Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:23.2
occ:1.00
 CG A:GLN121 2.9 40.4 1.0
OG A:SER24 3.1 16.1 1.0
N A:GLY26 3.1 11.2 1.0
CA A:GLY26 3.5 11.6 1.0
CB A:SER24 3.5 14.1 1.0
CA A:GLN121 3.6 17.0 1.0
CB A:GLN121 3.8 24.1 1.0
CD A:GLN121 4.0 57.2 1.0
NE2 A:GLN121 4.0 77.3 1.0
N A:GLN121 4.0 15.9 1.0
CD1 A:ILE124 4.0 22.4 1.0
N A:LEU25 4.1 11.6 1.0
C A:LEU25 4.3 11.2 1.0
C A:SER24 4.3 12.1 1.0
CG1 A:ILE124 4.3 18.5 1.0
C A:VAL120 4.4 14.4 1.0
O A:VAL120 4.4 14.4 1.0
CG2 A:VAL120 4.4 17.2 1.0
CA A:SER24 4.5 13.4 1.0
C A:GLY26 4.5 9.6 1.0
CA A:LEU25 4.7 11.6 1.0
N A:ASN27 4.7 10.3 1.0
O A:SER24 4.7 13.4 1.0
O A:HOH403 4.7 18.1 0.3
C A:GLN121 4.8 16.3 1.0
O A:HOH302 4.9 18.3 0.5

Chlorine binding site 4 out of 4 in 6yjx

Go back to Chlorine Binding Sites List in 6yjx
Chlorine binding site 4 out of 4 in the Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Hen Egg-White Lysozyme Crystallized with Pas Polypeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:40.9
occ:1.00
 CE2 A:PHE38 3.7 13.0 1.0
NZ A:LYS33 3.9 25.6 1.0
O A:HOH417 4.0 24.9 0.5
CZ3 A:TRP123 4.0 18.5 1.0
CB A:ARG5 4.3 15.0 1.0
CD A:ARG5 4.3 17.0 1.0
CZ A:PHE38 4.4 12.4 1.0
CD A:LYS33 4.4 16.8 1.0
CE A:LYS33 4.4 21.1 1.0
CD2 A:PHE38 4.7 12.3 1.0
CG A:ARG5 4.7 15.9 1.0
O A:HOH417 4.8 29.8 0.5
CE3 A:TRP123 4.9 15.7 1.0
CH2 A:TRP123 4.9 20.8 1.0
NE A:ARG5 4.9 19.5 1.0

Reference:

A.Schiefner, R.Walser, M.Gebauer, A.Skerra. Proline/Alanine-Rich Sequence (Pas) Polypeptides As An Alternative to Peg Precipitants For Protein Crystallization. Acta Crystallogr.,Sect.F V. 76 320 2020.
ISSN: ESSN 2053-230X
PubMed: 32627748
DOI: 10.1107/S2053230X20008328
Page generated: Mon Jul 29 17:46:38 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy