Chlorine in PDB 6yp7: Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions

All present enzymatic activity of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions:
1.10.3.9;

The structure of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions also contains other interesting chemical elements:

Magnesium	(Mg)	198 atoms
Manganese	(Mn)	8 atoms
Iron	(Fe)	4 atoms
Calcium	(Ca)	2 atoms

The binding sites of Chlorine atom in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions (pdb code 6yp7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions, PDB code: 6yp7:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range: probe atom residue distance (Å) B Occ a:Cl403 b:0.3 occ:1.00 N a:GLU333 2.6 0.3 1.0 CA a:GLU333 3.4 0.3 1.0 C a:HIS332 3.5 1.0 1.0 CG a:GLU333 3.5 0.3 1.0 CA a:HIS332 3.5 1.0 1.0 CB a:HIS332 3.8 1.0 1.0 NZ d:LYS318 3.9 0.9 1.0 CB a:GLU333 4.0 0.3 1.0 CE d:LYS318 4.2 0.9 1.0 CG a:HIS332 4.6 1.0 1.0 O a:HIS332 4.7 1.0 1.0 CD2 a:HIS332 4.7 1.0 1.0 C a:GLU333 4.7 0.3 1.0 CD a:GLU333 4.8 0.3 1.0 CD2 d:LEU322 4.8 0.8 1.0 N a:HIS332 4.9 1.0 1.0 O a:MET331 4.9 0.5 1.0 N a:ARG334 5.0 0.5 1.0

Chlorine binding site 2 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range: probe atom residue distance (Å) B Occ c:Cl501 b:0.7 occ:1.00 OE1 c:GLN313 3.2 0.6 1.0 CD c:GLN313 3.3 0.6 1.0 CA c:ALA314 3.4 0.6 1.0 N c:ALA314 3.4 0.6 1.0 CG c:GLN313 3.5 0.6 1.0 CB c:ALA314 3.5 0.6 1.0 CD2 a:PHE339 3.5 0.8 1.0 CG a:PHE339 3.6 0.8 1.0 CE2 a:PHE339 3.9 0.8 1.0 C c:GLN313 3.9 0.6 1.0 NE2 c:GLN313 4.0 0.6 1.0 CB c:GLN313 4.0 0.6 1.0 CD1 a:PHE339 4.0 0.8 1.0 CB a:PHE339 4.1 0.8 1.0 CZ a:PHE339 4.3 0.8 1.0 O c:SER310 4.3 0.1 1.0 CE1 a:PHE339 4.4 0.8 1.0 O c:GLN313 4.4 0.6 1.0 CA c:GLN313 4.6 0.6 1.0 C c:ALA314 4.8 0.6 1.0 CD1 c:PHE317 5.0 0.1 1.0

Chlorine binding site 3 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:0.7 occ:1.00 N A:GLU333 2.6 0.2 1.0 CA A:GLU333 3.4 0.2 1.0 C A:HIS332 3.5 0.1 1.0 CG A:GLU333 3.5 0.2 1.0 CA A:HIS332 3.5 0.1 1.0 CB A:HIS332 3.8 0.1 1.0 CB A:GLU333 4.0 0.2 1.0 NZ D:LYS318 4.0 0.8 1.0 CE D:LYS318 4.3 0.8 1.0 CG A:HIS332 4.6 0.1 1.0 O A:HIS332 4.7 0.1 1.0 CD2 A:HIS332 4.7 0.1 1.0 C A:GLU333 4.7 0.2 1.0 CD A:GLU333 4.8 0.2 1.0 CD2 D:LEU322 4.8 0.0 1.0 N A:HIS332 4.9 0.1 1.0 O A:MET331 4.9 1.0 1.0 N A:ARG334 5.0 1.0 1.0

Chlorine binding site 4 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl501 b:0.7 occ:1.00 OE1 C:GLN313 3.1 0.3 1.0 CD C:GLN313 3.2 0.3 1.0 N C:ALA314 3.3 0.8 1.0 CA C:ALA314 3.3 0.8 1.0 CG C:GLN313 3.4 0.3 1.0 CD2 A:PHE339 3.5 0.3 1.0 CB C:ALA314 3.5 0.8 1.0 CG A:PHE339 3.6 0.3 1.0 C C:GLN313 3.8 0.3 1.0 CB C:GLN313 3.9 0.3 1.0 NE2 C:GLN313 3.9 0.3 1.0 CE2 A:PHE339 3.9 0.3 1.0 CD1 A:PHE339 4.0 0.3 1.0 CB A:PHE339 4.1 0.3 1.0 O C:SER310 4.2 0.8 1.0 CZ A:PHE339 4.3 0.3 1.0 O C:GLN313 4.3 0.3 1.0 CE1 A:PHE339 4.4 0.3 1.0 CA C:GLN313 4.5 0.3 1.0 C C:ALA314 4.8 0.8 1.0 CD1 C:PHE317 4.9 0.2 1.0

A.Grinzato, P.Albanese, R.Marotta, P.Swuec, G.Saracco, M.Bolognesi, G.Zanotti, C.Pagliano. High-Light Versus Low-Light: Effects on Paired Photosystem II Supercomplex Structural Rearrangement in Pea Plants. Int J Mol Sci V. 21 2020.
ISSN: ESSN 1422-0067
PubMed: 33207833
DOI: 10.3390/IJMS21228643