Chlorine in PDB 6ypd: Crystal Structure of Ampc From E. Coli with Cyclic Boronate 3 (CB3 / APC308)

Enzymatic activity of Crystal Structure of Ampc From E. Coli with Cyclic Boronate 3 (CB3 / APC308)

All present enzymatic activity of Crystal Structure of Ampc From E. Coli with Cyclic Boronate 3 (CB3 / APC308):
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Ampc From E. Coli with Cyclic Boronate 3 (CB3 / APC308), PDB code: 6ypd was solved by P.A.Lang, J.Brem, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.13 / 1.60
Space group P 43 3 2
Cell size a, b, c (Å), α, β, γ (°) 138.971, 138.971, 138.971, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 18.7

Other elements in 6ypd:

The structure of Crystal Structure of Ampc From E. Coli with Cyclic Boronate 3 (CB3 / APC308) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ampc From E. Coli with Cyclic Boronate 3 (CB3 / APC308) (pdb code 6ypd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Ampc From E. Coli with Cyclic Boronate 3 (CB3 / APC308), PDB code: 6ypd:

Chlorine binding site 1 out of 1 in 6ypd

Go back to Chlorine Binding Sites List in 6ypd
Chlorine binding site 1 out of 1 in the Crystal Structure of Ampc From E. Coli with Cyclic Boronate 3 (CB3 / APC308)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ampc From E. Coli with Cyclic Boronate 3 (CB3 / APC308) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:26.5
occ:0.33
ZN A:ZN408 2.3 22.6 0.3
NE2 A:HIS13 3.4 20.9 1.0
CD2 A:HIS13 3.6 20.0 1.0
CG A:ARG14 3.9 40.0 0.6
NE A:ARG14 4.2 45.7 0.4
CG A:ARG14 4.2 35.3 0.4
CD A:ARG14 4.7 44.8 0.6
CE1 A:HIS13 4.7 20.6 1.0
CD A:ARG14 4.8 43.5 0.4
CG A:HIS13 4.9 19.2 1.0
NH1 A:ARG14 5.0 40.3 0.4

Reference:

P.A.Lang, A.Parkova, T.M.Leissing, K.Calvopina, R.Cain, A.Krajnc, T.D.Panduwawala, J.Philippe, C.W.G.Fishwick, P.Trapencieris, M.G.P.Page, C.J.Schofield, J.Brem. Bicyclic Boronates As Potent Inhibitors of Ampc, the Class C Beta-Lactamase From Escherichia Coli Biomolecules 2020.
ISSN: ESSN 2218-273X
DOI: 10.3390/BIOM10060899
Page generated: Sat Dec 12 14:43:52 2020

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