Chlorine in PDB 6z1e: Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120)
Protein crystallography data
The structure of Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120), PDB code: 6z1e
was solved by
L.Popilka,
A.Bracher,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
28.75 /
2.45
|
Space group
|
H 3 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
112.920,
112.920,
284.327,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
21.3 /
26.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120)
(pdb code 6z1e). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120), PDB code: 6z1e:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 6z1e
Go back to
Chlorine Binding Sites List in 6z1e
Chlorine binding site 1 out
of 3 in the Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:70.0
occ:1.00
|
HE21
|
A:GLN213
|
2.3
|
69.8
|
1.0
|
H
|
A:LYS212
|
2.5
|
81.1
|
1.0
|
HB2
|
A:LYS212
|
2.7
|
63.1
|
1.0
|
HG2
|
A:GLN213
|
2.8
|
65.4
|
1.0
|
HD2
|
A:PRO211
|
2.9
|
75.8
|
1.0
|
HA
|
A:PHE210
|
2.9
|
81.6
|
1.0
|
NE2
|
A:GLN213
|
3.2
|
58.2
|
1.0
|
N
|
A:LYS212
|
3.3
|
67.6
|
1.0
|
CB
|
A:LYS212
|
3.6
|
52.5
|
1.0
|
C
|
A:PHE210
|
3.6
|
64.8
|
1.0
|
CA
|
A:PHE210
|
3.6
|
68.0
|
1.0
|
CD
|
A:PRO211
|
3.7
|
63.1
|
1.0
|
H
|
A:GLN213
|
3.7
|
61.4
|
1.0
|
CG
|
A:GLN213
|
3.7
|
54.5
|
1.0
|
N
|
A:PRO211
|
3.7
|
66.3
|
1.0
|
HE22
|
A:GLN213
|
3.7
|
69.8
|
1.0
|
HB3
|
A:PHE210
|
3.8
|
76.1
|
1.0
|
HG3
|
A:LYS212
|
3.8
|
97.2
|
1.0
|
CA
|
A:LYS212
|
3.9
|
51.9
|
1.0
|
HG2
|
A:PRO211
|
3.9
|
73.9
|
1.0
|
CD
|
A:GLN213
|
3.9
|
55.0
|
1.0
|
HD1
|
A:PHE210
|
3.9
|
67.9
|
1.0
|
HD2
|
A:LYS212
|
4.0
|
0.1
|
1.0
|
N
|
A:GLN213
|
4.0
|
51.2
|
1.0
|
HG3
|
A:GLN213
|
4.1
|
65.4
|
1.0
|
O
|
A:PHE210
|
4.1
|
69.8
|
1.0
|
HD11
|
A:LEU274
|
4.2
|
76.8
|
1.0
|
CG
|
A:LYS212
|
4.2
|
81.0
|
1.0
|
HD13
|
A:LEU274
|
4.2
|
76.8
|
1.0
|
CB
|
A:PHE210
|
4.2
|
63.4
|
1.0
|
C
|
A:LYS212
|
4.3
|
55.5
|
1.0
|
HB3
|
A:LYS212
|
4.3
|
63.1
|
1.0
|
CG
|
A:PRO211
|
4.3
|
61.6
|
1.0
|
C
|
A:PRO211
|
4.4
|
62.2
|
1.0
|
HD3
|
A:PRO211
|
4.4
|
75.8
|
1.0
|
CA
|
A:PRO211
|
4.6
|
63.4
|
1.0
|
CD1
|
A:LEU274
|
4.6
|
64.0
|
1.0
|
CD
|
A:LYS212
|
4.6
|
89.3
|
1.0
|
O
|
A:THR209
|
4.7
|
54.3
|
1.0
|
CD1
|
A:PHE210
|
4.7
|
56.6
|
1.0
|
CB
|
A:GLN213
|
4.8
|
48.0
|
1.0
|
HA
|
A:LYS212
|
4.8
|
62.2
|
1.0
|
N
|
A:PHE210
|
4.9
|
65.4
|
1.0
|
CA
|
A:GLN213
|
4.9
|
54.4
|
1.0
|
HB2
|
A:GLN213
|
5.0
|
57.7
|
1.0
|
HD12
|
A:LEU274
|
5.0
|
76.8
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 6z1e
Go back to
Chlorine Binding Sites List in 6z1e
Chlorine binding site 2 out
of 3 in the Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:90.2
occ:1.00
|
HH21
|
A:ARG79
|
2.5
|
91.4
|
1.0
|
HD22
|
A:ASN129
|
2.5
|
84.6
|
1.0
|
HE
|
A:ARG79
|
2.9
|
73.7
|
1.0
|
HA
|
A:THR126
|
3.1
|
68.5
|
1.0
|
HB1
|
A:ALA75
|
3.2
|
77.7
|
1.0
|
ND2
|
A:ASN129
|
3.3
|
70.5
|
1.0
|
NH2
|
A:ARG79
|
3.3
|
76.1
|
1.0
|
HG23
|
A:THR126
|
3.4
|
66.4
|
1.0
|
HD21
|
A:ASN129
|
3.5
|
84.6
|
1.0
|
OG1
|
A:THR126
|
3.6
|
50.9
|
1.0
|
NE
|
A:ARG79
|
3.7
|
61.4
|
1.0
|
CA
|
A:THR126
|
3.9
|
57.1
|
1.0
|
HG1
|
A:THR126
|
3.9
|
61.0
|
1.0
|
HH22
|
A:ARG79
|
4.0
|
91.4
|
1.0
|
CZ
|
A:ARG79
|
4.0
|
69.3
|
1.0
|
CB
|
A:ALA75
|
4.0
|
64.7
|
1.0
|
HB2
|
A:ALA75
|
4.0
|
77.7
|
1.0
|
CB
|
A:THR126
|
4.1
|
52.3
|
1.0
|
HB2
|
A:ASN129
|
4.1
|
84.7
|
1.0
|
CG2
|
A:THR126
|
4.1
|
55.4
|
1.0
|
CG
|
A:ASN129
|
4.4
|
68.4
|
1.0
|
N
|
A:THR126
|
4.4
|
47.8
|
1.0
|
HB3
|
A:ALA75
|
4.5
|
77.7
|
1.0
|
HD11
|
A:LEU122
|
4.5
|
79.0
|
1.0
|
HD12
|
A:LEU122
|
4.6
|
79.0
|
1.0
|
HG21
|
A:THR126
|
4.6
|
66.4
|
1.0
|
CB
|
A:ASN129
|
4.7
|
70.5
|
1.0
|
H
|
A:THR126
|
4.8
|
57.3
|
1.0
|
HG3
|
A:PRO140
|
4.8
|
0.1
|
1.0
|
HG22
|
A:THR126
|
4.8
|
66.4
|
1.0
|
O
|
A:ALA125
|
4.8
|
51.7
|
1.0
|
C
|
A:ALA125
|
4.8
|
49.4
|
1.0
|
HD2
|
A:ARG79
|
4.9
|
67.0
|
1.0
|
HB3
|
A:ASN129
|
4.9
|
84.7
|
1.0
|
CD
|
A:ARG79
|
4.9
|
55.9
|
1.0
|
HA
|
A:ALA75
|
4.9
|
75.9
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 6z1e
Go back to
Chlorine Binding Sites List in 6z1e
Chlorine binding site 3 out
of 3 in the Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the Aaa Domain of Rubisco Activase From Nostoc Sp. (Strain Pcc 7120) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:96.8
occ:1.00
|
H
|
B:LYS212
|
2.1
|
0.5
|
1.0
|
HD2
|
B:PRO211
|
2.7
|
0.1
|
1.0
|
HA
|
B:PHE210
|
2.8
|
0.6
|
1.0
|
HG2
|
B:GLN213
|
2.8
|
0.5
|
1.0
|
HE21
|
B:GLN213
|
2.9
|
0.7
|
1.0
|
N
|
B:LYS212
|
2.9
|
84.6
|
1.0
|
N
|
B:PRO211
|
3.3
|
90.7
|
1.0
|
C
|
B:PHE210
|
3.3
|
95.3
|
1.0
|
CB
|
B:LYS212
|
3.4
|
88.6
|
1.0
|
CD
|
B:PRO211
|
3.4
|
85.9
|
1.0
|
CA
|
B:PHE210
|
3.5
|
98.0
|
1.0
|
CA
|
B:LYS212
|
3.6
|
88.0
|
1.0
|
H
|
B:GLN213
|
3.6
|
0.6
|
1.0
|
HB3
|
B:PHE210
|
3.6
|
0.4
|
1.0
|
HG2
|
B:PRO211
|
3.6
|
0.2
|
1.0
|
NE2
|
B:GLN213
|
3.7
|
94.8
|
1.0
|
CG
|
B:GLN213
|
3.8
|
83.8
|
1.0
|
N
|
B:GLN213
|
3.9
|
88.0
|
1.0
|
O
|
B:PHE210
|
3.9
|
95.2
|
1.0
|
C
|
B:PRO211
|
4.0
|
83.7
|
1.0
|
C
|
B:LYS212
|
4.0
|
85.2
|
1.0
|
CG
|
B:PRO211
|
4.1
|
88.5
|
1.0
|
CB
|
B:PHE210
|
4.1
|
98.7
|
1.0
|
HD1
|
B:PHE210
|
4.1
|
0.2
|
1.0
|
HD3
|
B:PRO211
|
4.2
|
0.1
|
1.0
|
CA
|
B:PRO211
|
4.2
|
88.4
|
1.0
|
HG3
|
B:GLN213
|
4.2
|
0.5
|
1.0
|
CD
|
B:GLN213
|
4.3
|
84.3
|
1.0
|
HE22
|
B:GLN213
|
4.3
|
0.7
|
1.0
|
HA
|
B:LYS212
|
4.5
|
0.6
|
1.0
|
O
|
B:THR209
|
4.7
|
93.6
|
1.0
|
CB
|
B:GLN213
|
4.7
|
79.4
|
1.0
|
N
|
B:PHE210
|
4.7
|
93.0
|
1.0
|
HB2
|
B:GLN213
|
4.8
|
95.3
|
1.0
|
HG3
|
B:PRO211
|
4.8
|
0.2
|
1.0
|
CB
|
B:PRO211
|
4.8
|
87.6
|
1.0
|
CA
|
B:GLN213
|
4.8
|
82.2
|
1.0
|
HB2
|
B:PHE210
|
4.8
|
0.4
|
1.0
|
CD1
|
B:PHE210
|
4.8
|
99.3
|
1.0
|
O
|
B:LYS212
|
4.9
|
82.2
|
1.0
|
CG
|
B:PHE210
|
5.0
|
97.7
|
1.0
|
HA
|
B:PRO211
|
5.0
|
0.0
|
1.0
|
|
Reference:
M.Flecken,
H.Wang,
L.Popilka,
F.U.Hartl,
A.Bracher,
M.Hayer-Hartl.
Dual Role of Rca-Like Protein in Rubisco Metabolic Repair and Carboxysome Organization To Be Published.
Page generated: Mon Jul 29 17:55:13 2024
|