Chlorine in PDB 6zcz: Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody.

The structure of Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody., PDB code: 6zcz was solved by D.Zhou, Y.Zhao, E.E.Fry, J.Ren, D.I.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.26 / 2.65
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	177.867, 177.867, 87.715, 90.00, 90.00, 120.00
R / Rfree (%)	21.5 / 26

The structure of Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody. also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody. (pdb code 6zcz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody., PDB code: 6zcz:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody. within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl602 b:0.6 occ:1.00 OH E:TYR396 2.7 0.6 1.0 NH2 E:ARG357 2.8 96.8 1.0 NE E:ARG357 3.5 98.5 1.0 CZ E:ARG357 3.5 0.1 1.0 CZ E:TYR396 4.0 93.3 1.0 OE2 E:GLU516 4.3 0.3 1.0 ND2 E:ASN394 4.6 0.3 1.0 CE1 E:TYR396 4.6 0.4 1.0 CD E:ARG357 4.8 0.4 1.0 NH1 E:ARG357 4.8 0.3 1.0 CG E:ASN394 4.9 0.2 1.0

Chlorine binding site 2 out of 5 in the Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody. within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl201 b:77.8 occ:1.00 OD1 F:ASN84 3.3 77.3 1.0 CB F:SER17 3.8 67.0 1.0 OG F:SER17 3.9 94.4 1.0 CG F:ASN84 4.1 63.3 1.0 ND2 F:ASN84 4.7 75.6 1.0 CB F:ASN84 5.0 53.6 1.0

Chlorine binding site 3 out of 5 in the Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody. within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl301 b:80.6 occ:1.00 N H:ALA26 3.4 66.2 1.0 ND2 H:ASN77 3.8 74.7 1.0 CA H:SER25 4.1 52.9 1.0 CA H:ALA26 4.2 74.3 1.0 C H:SER25 4.3 60.4 1.0 CB H:SER25 4.8 54.2 1.0 N H:PHE27 4.8 71.0 1.0 O H:PHE27 4.9 67.2 1.0

Chlorine binding site 4 out of 5 in the Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody. within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl302 b:84.0 occ:1.00 ND2 H:ASN74 3.1 78.7 1.0 CG H:ASN74 4.1 69.8 1.0 CB H:SER30 4.2 73.0 1.0 CB H:ASN74 4.4 74.1 1.0 O H:SER30 4.6 63.6 1.0 OG H:SER30 4.7 68.0 1.0 CA H:ASP54 4.9 66.8 1.0 O H:TYR53 5.0 77.8 1.0

Chlorine binding site 5 out of 5 in the Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in Ternary Complex with EY6A Fab and A Nanobody. within 5.0Å range: probe atom residue distance (Å) B Occ L:Cl301 b:79.2 occ:1.00 N L:GLY41 2.9 67.2 1.0 CA L:GLY41 3.3 62.4 1.0 C L:GLY41 3.8 72.5 1.0 NE2 L:GLN38 3.9 50.6 1.0 C L:PRO40 4.0 66.9 1.0 O L:LYS42 4.1 82.2 1.0 O L:LYS39 4.1 60.9 1.0 O L:GLY41 4.1 73.0 1.0 CA L:PRO40 4.3 61.5 1.0 CD L:GLN38 4.3 54.8 1.0 N L:LYS42 4.4 76.9 1.0 CG L:GLN38 4.7 46.0 1.0 OE1 L:GLN38 4.8 73.9 1.0 OE1 H:GLN39 4.9 58.0 1.0

D.Zhou, H.M.E.Duyvesteyn, C.Chen, C.Huang, T.Chen, S.Shih, Y.Lin, C.Cheng, S.Cheng, Y.Huang, T.Lin, C.Ma, J.Huo, L.Carrique, T.Malinauskas, R.R.Ruza, P.N.M.Shah, T.K.Tan, P.Rijal, K.Godwin, K.Bewley, J.Tree, J.Radecke, N.G.Paterson, P.Supasa, J.Mongkolsapaya, G.R.Screaton, M.Carroll, W.James, R.J.Owens, J.Naismith, A.Townsend, E.E.Fry, Y.Zhao, J.Ren, D.I.Stuart, K.A.Huang. Structural Basis For the Neutralization of Sars-Cov-2 By An Antibody From A Convalescent Patient To Be Published.