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Chlorine in PDB 6zmm: Crystal Structure of Human NDRG1

Protein crystallography data

The structure of Crystal Structure of Human NDRG1, PDB code: 6zmm was solved by V.Mustonen, P.Kursula, S.Ruskamo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.55 / 2.96
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 108.570, 108.570, 119.330, 90.00, 90.00, 90.00
R / Rfree (%) 26.9 / 29.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human NDRG1 (pdb code 6zmm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human NDRG1, PDB code: 6zmm:

Chlorine binding site 1 out of 1 in 6zmm

Go back to Chlorine Binding Sites List in 6zmm
Chlorine binding site 1 out of 1 in the Crystal Structure of Human NDRG1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human NDRG1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:83.2
occ:0.50
HA A:THR282 3.1 87.5 1.0
O A:THR281 3.4 71.0 1.0
H A:LEU283 3.4 82.7 1.0
HD21 A:ASN273 3.4 81.7 1.0
HB3 A:PRO278 3.7 84.4 1.0
CA A:THR282 4.1 72.9 1.0
N A:LEU283 4.1 68.9 1.0
ND2 A:ASN273 4.2 68.0 1.0
C A:THR281 4.3 68.2 1.0
HA A:PRO278 4.3 79.8 1.0
HB2 A:LEU283 4.5 81.1 1.0
HB3 A:LEU283 4.5 81.1 1.0
C A:THR282 4.6 68.7 1.0
N A:THR282 4.6 70.5 1.0
HD22 A:ASN273 4.6 81.7 1.0
CB A:PRO278 4.6 70.3 1.0
O A:PRO278 4.8 64.9 1.0
HG22 A:THR282 4.8 88.7 1.0
HG22 A:THR281 4.8 81.5 1.0
CB A:LEU283 4.9 67.6 1.0
CA A:PRO278 4.9 66.5 1.0
HB A:THR282 4.9 85.0 1.0

Reference:

V.Mustonen, G.Muruganandam, R.Loris, P.Kursula, S.Ruskamo. Crystal and Solution Structure of NDRG1, A Membrane-Binding Protein Linked to Myelination and Tumour Suppression. Febs J. 2020.
ISSN: ISSN 1742-464X
PubMed: 33305529
DOI: 10.1111/FEBS.15660
Page generated: Mon Jul 29 18:07:10 2024

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