Chlorine in PDB 6zpd: Gamma-Tocopherol Transfer Protein

The structure of Gamma-Tocopherol Transfer Protein, PDB code: 6zpd was solved by W.Aeschimann, S.Kammer, S.Staats, A.Stocker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.41 / 2.24
Space group	I 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	167.687, 167.687, 167.687, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 21.8

The binding sites of Chlorine atom in the Gamma-Tocopherol Transfer Protein (pdb code 6zpd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Gamma-Tocopherol Transfer Protein, PDB code: 6zpd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Gamma-Tocopherol Transfer Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Gamma-Tocopherol Transfer Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:97.0 occ:1.00 NE2 A:HIS236 3.2 35.6 1.0 O A:HOH552 3.3 61.2 1.0 ND1 A:HIS223 3.7 39.6 1.0 CE1 A:HIS225 3.7 49.0 1.0 CD2 A:HIS236 4.1 27.1 1.0 CE1 A:HIS236 4.1 42.1 1.0 ND1 A:HIS225 4.3 45.0 1.0 CG A:HIS223 4.5 35.4 1.0 CB A:HIS223 4.5 35.6 1.0 CE1 A:HIS223 4.6 41.4 1.0 NE2 A:HIS225 4.6 38.4 1.0 CB A:SER232 4.7 54.5 1.0

Chlorine binding site 2 out of 2 in the Gamma-Tocopherol Transfer Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Gamma-Tocopherol Transfer Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl304 b:75.4 occ:1.00 O A:HOH407 2.3 68.9 1.0 O A:HOH563 3.0 60.3 1.0 N A:SER84 3.8 51.9 1.0 NH1 A:ARG134 4.0 43.6 0.4 O A:GLU82 4.1 71.5 1.0 OG A:SER84 4.2 73.3 1.0 CA A:ILE83 4.2 76.4 1.0 CB A:SER84 4.4 64.1 1.0 C A:ILE83 4.6 73.7 1.0 CD1 A:TYR130 4.6 59.0 1.0 CB A:TYR130 4.6 43.0 1.0 CG A:TYR130 4.7 60.6 1.0 CA A:SER84 4.8 58.4 1.0 O A:HOH470 4.8 58.8 1.0 CG1 A:ILE83 4.9 56.7 1.0 O A:HOH402 4.9 55.4 1.0 C A:GLU82 5.0 74.3 1.0

W.Aeschimann, S.Kammer, S.Staats, P.Schneider, G.Schneider, G.Rimbach, M.Cascella, A.Stocker. Engineering of A Functional Gamma-Tocopherol Transfer Protein. Redox Biol V. 38 01773 2020.
ISSN: ISSN 2213-2317
PubMed: 33197771
DOI: 10.1016/J.REDOX.2020.101773