Atomistry » Chlorine » PDB 6zp8-6zy0 » 6zpl
Atomistry »
  Chlorine »
    PDB 6zp8-6zy0 »
      6zpl »

Chlorine in PDB 6zpl: Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions.

Enzymatic activity of Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions.

All present enzymatic activity of Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions.:
3.2.1.4;

Protein crystallography data

The structure of Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions., PDB code: 6zpl was solved by A.Shahsavar, P.Stohler, G.Bourenkov, I.Zimmermann, M.Siegrist, W.Guba, E.Pinard, S.Sinning, M.A.Seeger, T.R.Schneider, R.J.P.Dawson, P.Nissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.07 / 3.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 116.41, 69.71, 149.43, 90, 92.86, 90
R / Rfree (%) 27.7 / 29.1

Other elements in 6zpl:

The structure of Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions. also contains other interesting chemical elements:

Fluorine (F) 12 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions. (pdb code 6zpl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions., PDB code: 6zpl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6zpl

Go back to Chlorine Binding Sites List in 6zpl
Chlorine binding site 1 out of 2 in the Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:75.0
occ:1.00
 HH B:TYR142 1.8 71.3 1.0
OH B:TYR142 2.5 69.0 1.0
OG B:SER371 2.6 66.3 1.0
HE21 B:GLN367 2.7 65.0 1.0
HG B:SER371 2.7 67.3 1.0
HB2 B:SER371 2.8 64.5 1.0
HB3 B:SER371 2.8 64.8 1.0
OG B:SER407 2.8 66.4 1.0
CB B:SER371 2.9 65.9 1.0
HG B:SER407 3.3 66.2 1.0
CZ B:TYR142 3.4 70.0 1.0
HG3 B:GLN367 3.4 69.9 1.0
HE1 B:TYR142 3.5 74.6 1.0
HB3 B:ASN122 3.5 60.2 1.0
HD21 B:ASN403 3.5 65.5 1.0
NE2 B:GLN367 3.5 66.0 1.0
HB3 B:SER407 3.8 67.3 1.0
HD1 B:PHE126 3.8 67.9 1.0
CE1 B:TYR142 3.8 70.5 1.0
CB B:SER407 3.8 66.9 1.0
ND2 B:ASN403 3.9 66.5 1.0
HE22 B:GLN367 4.1 64.1 1.0
HB2 B:PHE126 4.1 63.4 1.0
HD22 B:ASN403 4.1 66.2 1.0
HD21 B:ASN122 4.2 61.3 1.0
O B:GLN367 4.2 68.3 1.0
HB2 B:SER407 4.3 68.3 1.0
HA B:ALA368 4.3 75.8 1.0
CG B:GLN367 4.3 68.3 1.0
HB2 B:ASN122 4.3 60.3 1.0
CD B:GLN367 4.3 66.8 1.0
CB B:ASN122 4.4 63.5 1.0
CA B:SER371 4.4 65.8 1.0
CD1 B:PHE126 4.5 67.3 1.0
CE2 B:TYR142 4.5 70.8 1.0
H B:SER371 4.6 67.1 1.0
HD12 B:LEU146 4.6 78.8 1.0
HG2 B:GLN367 4.7 69.9 1.0
HE2 B:TYR142 4.7 75.5 1.0
CG B:ASN403 4.8 67.4 1.0
HA B:CYS404 4.8 74.6 1.0
HA B:ASN122 4.9 59.1 1.0
O B:ASN403 4.9 67.6 1.0
HA B:SER371 4.9 64.0 1.0
C B:GLN367 4.9 69.4 1.0
CB B:PHE126 5.0 65.2 1.0

Chlorine binding site 2 out of 2 in 6zpl

Go back to Chlorine Binding Sites List in 6zpl
Chlorine binding site 2 out of 2 in the Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Inward-Open Structure of Human Glycine Transporter 1 in Complex with A Benzoylisoindoline Inhibitor, Sybody SB_GLYT1#7 and Bound Na and Cl Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl703

b:70.0
occ:1.00
 HE21 A:GLN367 2.1 61.1 1.0
HH A:TYR142 2.2 68.4 1.0
OH A:TYR142 2.6 67.8 1.0
OG A:SER407 2.8 64.5 1.0
HB3 A:SER371 2.9 59.0 1.0
HG3 A:GLN367 3.0 67.8 1.0
HD1 A:PHE126 3.1 67.7 1.0
NE2 A:GLN367 3.1 64.0 1.0
HG A:SER371 3.1 63.1 1.0
OG A:SER371 3.1 64.7 1.0
HB2 A:SER371 3.2 58.2 1.0
CB A:SER371 3.3 63.1 1.0
CZ A:TYR142 3.3 69.5 1.0
HB2 A:PHE126 3.4 61.3 1.0
HB3 A:SER407 3.4 64.6 1.0
HB3 A:ASN122 3.4 54.4 1.0
HG A:SER407 3.5 61.6 1.0
HE1 A:TYR142 3.5 73.5 1.0
CB A:SER407 3.7 65.5 1.0
HE22 A:GLN367 3.7 59.8 1.0
CE1 A:TYR142 3.7 70.2 1.0
CD1 A:PHE126 3.7 67.3 1.0
CG A:GLN367 3.8 67.1 1.0
CD A:GLN367 3.9 65.3 1.0
HD22 A:ASN403 3.9 57.8 1.0
HB2 A:ASN122 4.0 54.9 1.0
HG2 A:GLN367 4.1 68.4 1.0
HD21 A:ASN403 4.1 58.9 1.0
HB2 A:SER407 4.2 65.3 1.0
CB A:ASN122 4.2 60.9 1.0
O A:GLN367 4.3 66.6 1.0
CB A:PHE126 4.3 64.3 1.0
ND2 A:ASN403 4.3 62.9 1.0
CG A:PHE126 4.3 66.0 1.0
CE2 A:TYR142 4.3 70.8 1.0
HD21 A:ASN122 4.4 54.0 1.0
HA A:ASN122 4.4 53.9 1.0
CE1 A:PHE126 4.5 69.1 1.0
HE1 A:PHE126 4.5 73.1 1.0
HA A:ALA368 4.6 72.7 1.0
HE2 A:TYR142 4.6 75.3 1.0
HB3 A:PHE126 4.7 60.6 1.0
CA A:SER371 4.8 62.6 1.0
HA A:SER407 4.8 61.3 1.0
C A:GLN367 4.9 68.1 1.0
H A:SER371 4.9 60.8 1.0
CD1 A:TYR142 4.9 72.1 1.0
CA A:SER407 4.9 64.7 1.0
CA A:ASN122 5.0 60.5 1.0

Reference:

A.Shahsavar, P.Stohler, G.Bourenkov, I.Zimmermann, M.Siegrist, W.Guba, E.Pinard, S.Sinning, M.A.Seeger, T.R.Schneider, R.J.P.Dawson, P.Nissen. Structural Insights Into the Inhibition of Glycine Reuptake. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 33658720
DOI: 10.1038/S41586-021-03274-Z
Page generated: Mon Jul 29 18:10:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy