Chlorine in PDB 6zrw: Crystal Structure of the Fungal Lectin CML1
Protein crystallography data
The structure of Crystal Structure of the Fungal Lectin CML1, PDB code: 6zrw
was solved by
S.Bleuler-Martinez,
V.Olieric,
M.Sharpe,
G.Capitani,
M.Aebi,
M.Kuenzler,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
61.17 /
1.35
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
44.497,
73.626,
111.956,
90,
101.03,
90
|
R / Rfree (%)
|
14.6 /
17.6
|
Other elements in 6zrw:
The structure of Crystal Structure of the Fungal Lectin CML1 also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
26;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of the Fungal Lectin CML1
(pdb code 6zrw). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 26 binding sites of Chlorine where determined in the
Crystal Structure of the Fungal Lectin CML1, PDB code: 6zrw:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 1 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl204
b:98.1
occ:1.00
|
CL1
|
A:P3C204
|
0.0
|
98.1
|
1.0
|
PT
|
A:P3C204
|
2.4
|
222.5
|
1.0
|
NE1
|
A:TRP94
|
3.2
|
22.9
|
1.0
|
CE2
|
A:TRP94
|
4.2
|
21.8
|
1.0
|
CD1
|
A:TRP94
|
4.2
|
22.0
|
1.0
|
CZ2
|
A:TRP94
|
4.4
|
22.6
|
1.0
|
C3
|
A:GOL202
|
4.6
|
51.2
|
1.0
|
O
|
A:HOH339
|
4.6
|
31.9
|
1.0
|
O
|
B:HOH401
|
4.9
|
45.9
|
1.0
|
|
Chlorine binding site 2 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 2 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:130.0
occ:1.00
|
CL1
|
A:P3C205
|
0.0
|
130.0
|
1.0
|
PT
|
A:P3C205
|
2.4
|
195.4
|
1.0
|
CL2
|
A:P3C205
|
3.4
|
160.4
|
1.0
|
CL3
|
A:P3C205
|
3.4
|
135.7
|
1.0
|
CE
|
A:LYS19
|
3.5
|
33.1
|
1.0
|
CB
|
A:PRO39
|
3.7
|
17.1
|
1.0
|
CG
|
A:PRO39
|
3.8
|
18.1
|
1.0
|
NZ
|
A:LYS19
|
3.9
|
35.1
|
1.0
|
CE
|
A:LYS116
|
4.2
|
26.1
|
1.0
|
NZ
|
A:LYS116
|
4.6
|
28.9
|
1.0
|
CD
|
A:PRO39
|
4.7
|
16.4
|
1.0
|
CD
|
A:LYS19
|
4.9
|
29.6
|
1.0
|
O
|
A:HOH430
|
4.9
|
46.2
|
1.0
|
|
Chlorine binding site 3 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 3 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:160.4
occ:1.00
|
CL2
|
A:P3C205
|
0.0
|
160.4
|
1.0
|
PT
|
A:P3C205
|
2.4
|
195.4
|
1.0
|
CE
|
A:LYS19
|
3.2
|
33.1
|
1.0
|
O
|
A:ALA37
|
3.4
|
15.0
|
1.0
|
CL1
|
A:P3C205
|
3.4
|
130.0
|
1.0
|
CD
|
A:PRO39
|
3.7
|
16.4
|
1.0
|
CB
|
A:ALA37
|
3.9
|
14.6
|
1.0
|
NZ
|
A:LYS19
|
3.9
|
35.1
|
1.0
|
CG
|
A:PRO39
|
4.0
|
18.1
|
1.0
|
C
|
A:ALA37
|
4.0
|
15.1
|
1.0
|
CG
|
A:LYS116
|
4.0
|
18.7
|
1.0
|
CB
|
A:ASP115
|
4.2
|
14.2
|
1.0
|
CE
|
A:LYS116
|
4.2
|
26.1
|
1.0
|
CD
|
A:LYS19
|
4.4
|
29.6
|
1.0
|
CB
|
A:PRO39
|
4.4
|
17.1
|
1.0
|
CG
|
A:ASP115
|
4.4
|
15.4
|
1.0
|
N
|
A:PRO39
|
4.4
|
15.6
|
1.0
|
CA
|
A:ALA37
|
4.6
|
13.9
|
1.0
|
CD
|
A:LYS116
|
4.6
|
22.2
|
1.0
|
OD2
|
A:ASP115
|
4.7
|
16.3
|
1.0
|
CG
|
A:LYS19
|
4.7
|
25.6
|
1.0
|
N
|
A:ILE38
|
4.8
|
15.4
|
1.0
|
N
|
A:LYS116
|
4.8
|
15.6
|
1.0
|
CL3
|
A:P3C205
|
4.9
|
135.7
|
1.0
|
OD1
|
A:ASP115
|
4.9
|
16.9
|
1.0
|
CA
|
A:ASP115
|
5.0
|
13.9
|
1.0
|
|
Chlorine binding site 4 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 4 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:135.7
occ:1.00
|
CL3
|
A:P3C205
|
0.0
|
135.7
|
1.0
|
PT
|
A:P3C205
|
2.4
|
195.4
|
1.0
|
NZ
|
A:LYS116
|
3.1
|
28.9
|
1.0
|
CL1
|
A:P3C205
|
3.4
|
130.0
|
1.0
|
CE
|
A:LYS116
|
3.6
|
26.1
|
1.0
|
CD
|
A:LYS116
|
4.6
|
22.2
|
1.0
|
CL2
|
A:P3C205
|
4.9
|
160.4
|
1.0
|
|
Chlorine binding site 5 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 5 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl203
b:175.5
occ:1.00
|
CL1
|
B:PC4203
|
0.0
|
175.5
|
1.0
|
PT
|
B:PC4203
|
2.4
|
175.3
|
1.0
|
CL4
|
B:PC4203
|
3.4
|
175.3
|
1.0
|
CL2
|
B:PC4203
|
3.4
|
175.6
|
1.0
|
O
|
B:HOH323
|
3.9
|
29.6
|
1.0
|
CE1
|
B:HIS5
|
4.3
|
18.0
|
1.0
|
NE2
|
B:HIS5
|
4.7
|
19.2
|
1.0
|
CL3
|
B:PC4203
|
4.9
|
175.4
|
1.0
|
O
|
B:HOH329
|
4.9
|
47.2
|
1.0
|
|
Chlorine binding site 6 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 6 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl203
b:175.6
occ:1.00
|
CL2
|
B:PC4203
|
0.0
|
175.6
|
1.0
|
PT
|
B:PC4203
|
2.4
|
175.3
|
1.0
|
CL1
|
B:PC4203
|
3.4
|
175.5
|
1.0
|
CL3
|
B:PC4203
|
3.4
|
175.4
|
1.0
|
CE1
|
B:HIS5
|
3.7
|
18.0
|
1.0
|
NE2
|
B:HIS5
|
4.0
|
19.2
|
1.0
|
CG2
|
A:VAL117
|
4.0
|
20.0
|
1.0
|
O
|
A:HOH417
|
4.0
|
37.7
|
1.0
|
O
|
B:HOH323
|
4.0
|
29.6
|
1.0
|
CZ2
|
B:TRP94
|
4.2
|
18.8
|
1.0
|
CG1
|
A:VAL117
|
4.2
|
20.6
|
1.0
|
NE1
|
B:TRP94
|
4.3
|
20.1
|
1.0
|
CB
|
A:VAL117
|
4.5
|
18.7
|
1.0
|
CE2
|
B:TRP94
|
4.6
|
18.6
|
1.0
|
ND1
|
B:HIS5
|
4.8
|
17.8
|
1.0
|
CL4
|
B:PC4203
|
4.8
|
175.3
|
1.0
|
|
Chlorine binding site 7 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 7 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl203
b:175.4
occ:1.00
|
CL3
|
B:PC4203
|
0.0
|
175.4
|
1.0
|
PT
|
B:PC4203
|
2.4
|
175.3
|
1.0
|
NE1
|
B:TRP94
|
3.3
|
20.1
|
1.0
|
CL4
|
B:PC4203
|
3.4
|
175.3
|
1.0
|
CL2
|
B:PC4203
|
3.4
|
175.6
|
1.0
|
CD1
|
B:TRP94
|
4.0
|
19.1
|
1.0
|
CE2
|
B:TRP94
|
4.3
|
18.6
|
1.0
|
C2
|
B:GOL202
|
4.4
|
56.7
|
1.0
|
C1
|
B:GOL202
|
4.5
|
47.1
|
1.0
|
C3
|
B:GOL202
|
4.6
|
38.5
|
1.0
|
CZ2
|
B:TRP94
|
4.8
|
18.8
|
1.0
|
CL1
|
B:PC4203
|
4.9
|
175.5
|
1.0
|
|
Chlorine binding site 8 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 8 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl203
b:175.3
occ:1.00
|
CL4
|
B:PC4203
|
0.0
|
175.3
|
1.0
|
PT
|
B:PC4203
|
2.4
|
175.3
|
1.0
|
CL3
|
B:PC4203
|
3.4
|
175.4
|
1.0
|
CL1
|
B:PC4203
|
3.4
|
175.5
|
1.0
|
NE1
|
B:TRP94
|
4.7
|
20.1
|
1.0
|
CL2
|
B:PC4203
|
4.8
|
175.6
|
1.0
|
CD1
|
B:TRP94
|
4.9
|
19.1
|
1.0
|
|
Chlorine binding site 9 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 9 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl204
b:130.4
occ:1.00
|
CL1
|
C:P3C204
|
0.0
|
130.4
|
1.0
|
PT
|
C:P3C204
|
2.4
|
287.1
|
1.0
|
NH2
|
D:ARG114
|
3.3
|
32.9
|
1.0
|
CL2
|
C:P3C204
|
3.4
|
162.9
|
1.0
|
CH3
|
C:ACT208
|
3.7
|
51.3
|
1.0
|
NE
|
D:ARG114
|
3.8
|
28.6
|
1.0
|
CZ
|
D:ARG114
|
3.8
|
31.5
|
1.0
|
O
|
C:ACT206
|
4.3
|
46.0
|
1.0
|
C
|
C:ACT208
|
4.4
|
62.0
|
1.0
|
OXT
|
C:ACT208
|
4.6
|
52.5
|
1.0
|
CL3
|
C:P3C204
|
4.8
|
80.5
|
1.0
|
C
|
C:ACT206
|
4.9
|
53.7
|
1.0
|
NH1
|
D:ARG114
|
4.9
|
33.5
|
1.0
|
OXT
|
C:ACT206
|
5.0
|
83.4
|
1.0
|
CD
|
D:ARG114
|
5.0
|
23.9
|
1.0
|
NE1
|
C:TRP94
|
5.0
|
23.1
|
1.0
|
|
Chlorine binding site 10 out
of 26 in 6zrw
Go back to
Chlorine Binding Sites List in 6zrw
Chlorine binding site 10 out
of 26 in the Crystal Structure of the Fungal Lectin CML1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl204
b:162.9
occ:1.00
|
CL2
|
C:P3C204
|
0.0
|
162.9
|
1.0
|
PT
|
C:P3C204
|
2.4
|
287.1
|
1.0
|
CL3
|
C:P3C204
|
3.4
|
80.5
|
1.0
|
CL1
|
C:P3C204
|
3.4
|
130.4
|
1.0
|
NE
|
D:ARG114
|
3.6
|
28.6
|
1.0
|
CH3
|
C:ACT208
|
3.7
|
51.3
|
1.0
|
CD
|
D:ARG114
|
3.7
|
23.9
|
1.0
|
CG1
|
D:VAL117
|
4.0
|
20.1
|
1.0
|
CZ2
|
C:TRP94
|
4.0
|
20.9
|
1.0
|
CG2
|
D:VAL117
|
4.1
|
18.4
|
1.0
|
NE1
|
C:TRP94
|
4.2
|
23.1
|
1.0
|
CZ
|
D:ARG114
|
4.3
|
31.5
|
1.0
|
CE2
|
C:TRP94
|
4.5
|
21.5
|
1.0
|
CB
|
D:VAL117
|
4.7
|
17.5
|
1.0
|
O
|
C:HOH323
|
4.7
|
36.6
|
1.0
|
NH2
|
D:ARG114
|
4.7
|
32.9
|
1.0
|
NH1
|
D:ARG114
|
4.9
|
33.5
|
1.0
|
|
Reference:
S.Bleuler-Martinez,
A.Varrot,
V.Olieric,
M.Schubert,
T.Wohlschlager,
D.Plaza,
M.Waelti,
Y.Duport,
G.Capitani,
M.Aebi,
M.Kuenzler.
Structure and Function of A Novel Fucose-Binding Protein From the Mushroom Coprinopsis Cinerea To Be Published.
Page generated: Mon Jul 29 18:11:10 2024
|